Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1019

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1018 and secD are separated by 377 nucleotidessecD and secF are separated by 2 nucleotidessecF and Shewana3_1021 are separated by 57 nucleotides Shewana3_1018: Shewana3_1018 - hypothetical protein (RefSeq), at 1,189,315 to 1,189,842 _1018 Shewana3_1019: secD - preprotein translocase subunit SecD (RefSeq), at 1,190,220 to 1,192,094 secD Shewana3_1020: secF - preprotein translocase subunit SecF (RefSeq), at 1,192,097 to 1,192,981 secF Shewana3_1021: Shewana3_1021 - hypothetical protein (RefSeq), at 1,193,039 to 1,193,338 _1021 Position (kb) 1190 1191 1192 1193Strain fitness (log2 ratio) -3 -2 -1 0 1at 1189.501 kb on - strand, within Shewana3_1018at 1189.622 kb on - strand, within Shewana3_1018at 1190.095 kb on - strandat 1190.129 kb on + strandat 1190.309 kb on - strandat 1190.311 kb on - strandat 1190.346 kb on + strandat 1190.375 kb on - strandat 1190.424 kb on - strand, within secDat 1190.482 kb on + strand, within secDat 1190.496 kb on - strand, within secDat 1190.522 kb on - strand, within secDat 1190.582 kb on + strand, within secDat 1190.582 kb on + strand, within secDat 1190.582 kb on + strand, within secDat 1190.590 kb on - strand, within secDat 1190.590 kb on - strand, within secDat 1190.617 kb on + strand, within secDat 1191.251 kb on - strand, within secDat 1191.403 kb on - strand, within secDat 1191.579 kb on - strand, within secDat 1191.747 kb on + strand, within secDat 1191.755 kb on - strand, within secDat 1191.879 kb on + strand, within secDat 1191.879 kb on + strand, within secDat 1192.049 kb on - strandat 1192.056 kb on + strandat 1192.056 kb on + strandat 1192.087 kb on + strandat 1192.095 kb on - strandat 1192.095 kb on - strandat 1192.389 kb on + strand, within secFat 1192.397 kb on - strand, within secFat 1192.447 kb on + strand, within secFat 1192.481 kb on - strand, within secFat 1192.491 kb on - strand, within secFat 1192.498 kb on + strand, within secFat 1192.797 kb on + strand, within secFat 1192.830 kb on + strand, within secFat 1192.945 kb on + strandat 1192.945 kb on + strandat 1192.953 kb on - strandat 1192.955 kb on + strandat 1193.046 kb on + strandat 1193.054 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,189,501 - Shewana3_1018 0.35 -0.7
1,189,622 - Shewana3_1018 0.58 -0.7
1,190,095 - +0.2
1,190,129 + -0.0
1,190,309 - -0.2
1,190,311 - -2.2
1,190,346 + -0.2
1,190,375 - +0.3
1,190,424 - secD Shewana3_1019 0.11 +0.8
1,190,482 + secD Shewana3_1019 0.14 -0.1
1,190,496 - secD Shewana3_1019 0.15 +0.2
1,190,522 - secD Shewana3_1019 0.16 +1.1
1,190,582 + secD Shewana3_1019 0.19 -0.2
1,190,582 + secD Shewana3_1019 0.19 -0.3
1,190,582 + secD Shewana3_1019 0.19 +0.9
1,190,590 - secD Shewana3_1019 0.20 +0.5
1,190,590 - secD Shewana3_1019 0.20 -0.1
1,190,617 + secD Shewana3_1019 0.21 +1.7
1,191,251 - secD Shewana3_1019 0.55 -0.3
1,191,403 - secD Shewana3_1019 0.63 -3.3
1,191,579 - secD Shewana3_1019 0.72 -0.9
1,191,747 + secD Shewana3_1019 0.81 +0.5
1,191,755 - secD Shewana3_1019 0.82 +1.0
1,191,879 + secD Shewana3_1019 0.88 -0.1
1,191,879 + secD Shewana3_1019 0.88 +0.6
1,192,049 - +1.2
1,192,056 + +1.7
1,192,056 + +1.4
1,192,087 + -0.6
1,192,095 - -0.8
1,192,095 - +0.2
1,192,389 + secF Shewana3_1020 0.33 -0.7
1,192,397 - secF Shewana3_1020 0.34 +0.3
1,192,447 + secF Shewana3_1020 0.40 -1.2
1,192,481 - secF Shewana3_1020 0.43 -0.7
1,192,491 - secF Shewana3_1020 0.45 +0.7
1,192,498 + secF Shewana3_1020 0.45 +0.9
1,192,797 + secF Shewana3_1020 0.79 +0.3
1,192,830 + secF Shewana3_1020 0.83 +0.3
1,192,945 + +0.5
1,192,945 + +0.5
1,192,953 - -0.4
1,192,955 + -0.4
1,193,046 + +0.7
1,193,054 - +0.2

Or see this region's nucleotide sequence