Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0964 and Shewana3_0965 are separated by 192 nucleotides Shewana3_0965 and Shewana3_0966 are separated by 72 nucleotides Shewana3_0966 and Shewana3_0967 are separated by 168 nucleotides
Shewana3_0964: Shewana3_0964 - peptidase M48, Ste24p (RefSeq), at 1,131,543 to 1,132,352
_0964
Shewana3_0965: Shewana3_0965 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 1,132,545 to 1,133,162
_0965
Shewana3_0966: Shewana3_0966 - dihydrodipicolinate reductase (RefSeq), at 1,133,235 to 1,134,047
_0966
Shewana3_0967: Shewana3_0967 - carbamoyl phosphate synthase small subunit (RefSeq), at 1,134,216 to 1,135,376
_0967
Position (kb)
1133
1134
1135 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2
3 at 1132.745 kb on + strand, within Shewana3_0965 at 1132.760 kb on + strand, within Shewana3_0965 at 1132.827 kb on + strand, within Shewana3_0965 at 1132.955 kb on - strand, within Shewana3_0965 at 1132.957 kb on + strand, within Shewana3_0965 at 1133.049 kb on + strand, within Shewana3_0965 at 1133.218 kb on + strand at 1134.666 kb on + strand, within Shewana3_0967 at 1134.674 kb on + strand, within Shewana3_0967 at 1134.674 kb on - strand, within Shewana3_0967 at 1134.681 kb on + strand, within Shewana3_0967 at 1134.792 kb on + strand, within Shewana3_0967 at 1134.911 kb on - strand, within Shewana3_0967 at 1134.966 kb on - strand, within Shewana3_0967 at 1135.046 kb on - strand, within Shewana3_0967
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,132,745 + Shewana3_0965 0.32 +2.7 1,132,760 + Shewana3_0965 0.35 +2.3 1,132,827 + Shewana3_0965 0.46 +3.1 1,132,955 - Shewana3_0965 0.66 -1.3 1,132,957 + Shewana3_0965 0.67 +3.1 1,133,049 + Shewana3_0965 0.82 +2.9 1,133,218 + -1.7 1,134,666 + Shewana3_0967 0.39 -5.0 1,134,674 + Shewana3_0967 0.39 -4.6 1,134,674 - Shewana3_0967 0.39 -4.4 1,134,681 + Shewana3_0967 0.40 -2.8 1,134,792 + Shewana3_0967 0.50 -6.0 1,134,911 - Shewana3_0967 0.60 -2.2 1,134,966 - Shewana3_0967 0.65 -5.3 1,135,046 - Shewana3_0967 0.71 -4.9
Or see this region's nucleotide sequence