Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0861

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0860 and Shewana3_0861 are separated by 186 nucleotidesShewana3_0861 and Shewana3_0862 are separated by 430 nucleotides Shewana3_0860: Shewana3_0860 - hypothetical protein (RefSeq), at 1,001,361 to 1,002,908 _0860 Shewana3_0861: Shewana3_0861 - phospholipase A1 (RefSeq), at 1,003,095 to 1,003,979 _0861 Shewana3_0862: Shewana3_0862 - uroporphyrinogen-III C-methyltransferase (RefSeq), at 1,004,410 to 1,005,240 _0862 Position (kb) 1003 1004Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1002.096 kb on - strand, within Shewana3_0860at 1002.151 kb on + strand, within Shewana3_0860at 1002.164 kb on - strand, within Shewana3_0860at 1002.225 kb on - strand, within Shewana3_0860at 1002.404 kb on - strand, within Shewana3_0860at 1002.518 kb on - strand, within Shewana3_0860at 1002.560 kb on - strand, within Shewana3_0860at 1002.767 kb on + strandat 1002.879 kb on + strandat 1002.881 kb on - strandat 1002.887 kb on - strandat 1003.086 kb on + strandat 1003.127 kb on - strandat 1003.274 kb on + strand, within Shewana3_0861at 1003.285 kb on + strand, within Shewana3_0861at 1003.337 kb on - strand, within Shewana3_0861at 1003.361 kb on - strand, within Shewana3_0861at 1003.449 kb on + strand, within Shewana3_0861at 1003.537 kb on + strand, within Shewana3_0861at 1003.537 kb on + strand, within Shewana3_0861at 1003.830 kb on + strand, within Shewana3_0861at 1004.454 kb on - strandat 1004.480 kb on - strandat 1004.533 kb on + strand, within Shewana3_0862at 1004.533 kb on + strand, within Shewana3_0862at 1004.577 kb on + strand, within Shewana3_0862at 1004.622 kb on + strand, within Shewana3_0862at 1004.622 kb on + strand, within Shewana3_0862at 1004.622 kb on + strand, within Shewana3_0862at 1004.630 kb on - strand, within Shewana3_0862at 1004.635 kb on - strand, within Shewana3_0862at 1004.827 kb on + strand, within Shewana3_0862at 1004.951 kb on - strand, within Shewana3_0862

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,002,096 - Shewana3_0860 0.47 +0.4
1,002,151 + Shewana3_0860 0.51 +0.0
1,002,164 - Shewana3_0860 0.52 +1.6
1,002,225 - Shewana3_0860 0.56 +1.2
1,002,404 - Shewana3_0860 0.67 +1.7
1,002,518 - Shewana3_0860 0.75 -0.4
1,002,560 - Shewana3_0860 0.77 -0.9
1,002,767 + +0.6
1,002,879 + +0.6
1,002,881 - +0.7
1,002,887 - +0.5
1,003,086 + -1.2
1,003,127 - -0.1
1,003,274 + Shewana3_0861 0.20 +1.7
1,003,285 + Shewana3_0861 0.21 +0.6
1,003,337 - Shewana3_0861 0.27 +0.4
1,003,361 - Shewana3_0861 0.30 -1.2
1,003,449 + Shewana3_0861 0.40 -0.8
1,003,537 + Shewana3_0861 0.50 -0.6
1,003,537 + Shewana3_0861 0.50 -0.0
1,003,830 + Shewana3_0861 0.83 +0.1
1,004,454 - -5.5
1,004,480 - -3.7
1,004,533 + Shewana3_0862 0.15 -4.5
1,004,533 + Shewana3_0862 0.15 -3.0
1,004,577 + Shewana3_0862 0.20 -1.3
1,004,622 + Shewana3_0862 0.26 -1.6
1,004,622 + Shewana3_0862 0.26 -4.1
1,004,622 + Shewana3_0862 0.26 -3.9
1,004,630 - Shewana3_0862 0.26 -5.2
1,004,635 - Shewana3_0862 0.27 -0.6
1,004,827 + Shewana3_0862 0.50 -3.8
1,004,951 - Shewana3_0862 0.65 -1.6

Or see this region's nucleotide sequence