Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0844 and Shewana3_0845 are separated by 171 nucleotides Shewana3_0845 and Shewana3_0846 are separated by 192 nucleotides
Shewana3_0844: Shewana3_0844 - ErfK/YbiS/YcfS/YnhG family protein (RefSeq), at 977,741 to 978,655
_0844
Shewana3_0845: Shewana3_0845 - anaerobic nitric oxide reductase transcription regulator (RefSeq), at 978,827 to 980,383
_0845
Shewana3_0846: Shewana3_0846 - putative nitric oxide reductase (subunit B) transmembrane protein (RefSeq), at 980,576 to 982,861
_0846
Position (kb) 978
979
980
981 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 977.857 kb on - strand, within Shewana3_0844 at 977.889 kb on - strand, within Shewana3_0844 at 977.906 kb on + strand, within Shewana3_0844 at 978.013 kb on - strand, within Shewana3_0844 at 978.038 kb on + strand, within Shewana3_0844 at 978.079 kb on - strand, within Shewana3_0844 at 978.090 kb on + strand, within Shewana3_0844 at 978.142 kb on - strand, within Shewana3_0844 at 978.241 kb on - strand, within Shewana3_0844 at 978.459 kb on - strand, within Shewana3_0844 at 978.517 kb on - strand, within Shewana3_0844 at 978.529 kb on - strand, within Shewana3_0844 at 978.529 kb on - strand, within Shewana3_0844 at 978.531 kb on + strand, within Shewana3_0844 at 978.539 kb on - strand, within Shewana3_0844 at 978.539 kb on - strand, within Shewana3_0844 at 978.604 kb on + strand at 978.719 kb on - strand at 978.744 kb on - strand at 978.954 kb on + strand at 979.147 kb on - strand, within Shewana3_0845 at 979.172 kb on + strand, within Shewana3_0845 at 979.180 kb on - strand, within Shewana3_0845 at 979.295 kb on - strand, within Shewana3_0845 at 979.297 kb on + strand, within Shewana3_0845 at 979.649 kb on + strand, within Shewana3_0845 at 979.649 kb on + strand, within Shewana3_0845 at 979.657 kb on - strand, within Shewana3_0845 at 979.907 kb on + strand, within Shewana3_0845 at 979.915 kb on - strand, within Shewana3_0845 at 979.938 kb on - strand, within Shewana3_0845 at 979.938 kb on - strand, within Shewana3_0845 at 979.938 kb on - strand, within Shewana3_0845 at 979.938 kb on - strand, within Shewana3_0845 at 979.985 kb on - strand, within Shewana3_0845 at 980.004 kb on + strand, within Shewana3_0845 at 980.199 kb on + strand, within Shewana3_0845 at 980.227 kb on + strand, within Shewana3_0845 at 980.242 kb on + strand at 980.273 kb on + strand at 980.454 kb on + strand at 980.476 kb on + strand at 980.512 kb on + strand at 980.535 kb on + strand at 980.626 kb on + strand at 980.660 kb on + strand at 980.660 kb on + strand at 980.699 kb on - strand at 980.751 kb on - strand at 980.819 kb on + strand, within Shewana3_0846 at 980.885 kb on + strand, within Shewana3_0846 at 980.931 kb on + strand, within Shewana3_0846 at 980.931 kb on - strand, within Shewana3_0846 at 980.946 kb on + strand, within Shewana3_0846 at 980.990 kb on + strand, within Shewana3_0846 at 980.990 kb on + strand, within Shewana3_0846 at 981.261 kb on - strand, within Shewana3_0846 at 981.292 kb on - strand, within Shewana3_0846
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 977,857 - Shewana3_0844 0.13 -1.5 977,889 - Shewana3_0844 0.16 -1.2 977,906 + Shewana3_0844 0.18 -2.0 978,013 - Shewana3_0844 0.30 -3.3 978,038 + Shewana3_0844 0.32 -1.4 978,079 - Shewana3_0844 0.37 -0.7 978,090 + Shewana3_0844 0.38 -0.4 978,142 - Shewana3_0844 0.44 -2.6 978,241 - Shewana3_0844 0.55 -1.6 978,459 - Shewana3_0844 0.78 -2.0 978,517 - Shewana3_0844 0.85 -3.1 978,529 - Shewana3_0844 0.86 -1.9 978,529 - Shewana3_0844 0.86 -1.0 978,531 + Shewana3_0844 0.86 -2.4 978,539 - Shewana3_0844 0.87 -2.7 978,539 - Shewana3_0844 0.87 -3.8 978,604 + -0.6 978,719 - +1.2 978,744 - +1.0 978,954 + +0.5 979,147 - Shewana3_0845 0.21 -0.2 979,172 + Shewana3_0845 0.22 +1.0 979,180 - Shewana3_0845 0.23 -1.4 979,295 - Shewana3_0845 0.30 +0.6 979,297 + Shewana3_0845 0.30 +0.1 979,649 + Shewana3_0845 0.53 +2.1 979,649 + Shewana3_0845 0.53 +1.0 979,657 - Shewana3_0845 0.53 +0.4 979,907 + Shewana3_0845 0.69 +0.3 979,915 - Shewana3_0845 0.70 +0.4 979,938 - Shewana3_0845 0.71 -0.4 979,938 - Shewana3_0845 0.71 -2.2 979,938 - Shewana3_0845 0.71 +0.7 979,938 - Shewana3_0845 0.71 -0.7 979,985 - Shewana3_0845 0.74 -0.5 980,004 + Shewana3_0845 0.76 -0.9 980,199 + Shewana3_0845 0.88 +0.6 980,227 + Shewana3_0845 0.90 -0.9 980,242 + -0.3 980,273 + -0.3 980,454 + -0.3 980,476 + -0.6 980,512 + +1.2 980,535 + +0.7 980,626 + -0.6 980,660 + +0.2 980,660 + -0.5 980,699 - +1.3 980,751 - +0.6 980,819 + Shewana3_0846 0.11 -1.4 980,885 + Shewana3_0846 0.14 -0.4 980,931 + Shewana3_0846 0.16 -0.1 980,931 - Shewana3_0846 0.16 +0.1 980,946 + Shewana3_0846 0.16 -1.1 980,990 + Shewana3_0846 0.18 +0.1 980,990 + Shewana3_0846 0.18 -1.6 981,261 - Shewana3_0846 0.30 +0.4 981,292 - Shewana3_0846 0.31 -0.1
Or see this region's nucleotide sequence