Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0843 and Shewana3_0844 are separated by 96 nucleotides Shewana3_0844 and Shewana3_0845 are separated by 171 nucleotides
Shewana3_0843: Shewana3_0843 - hypothetical protein (RefSeq), at 976,817 to 977,644
_0843
Shewana3_0844: Shewana3_0844 - ErfK/YbiS/YcfS/YnhG family protein (RefSeq), at 977,741 to 978,655
_0844
Shewana3_0845: Shewana3_0845 - anaerobic nitric oxide reductase transcription regulator (RefSeq), at 978,827 to 980,383
_0845
Position (kb) 977
978
979 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 976.790 kb on + strand at 976.816 kb on - strand at 976.827 kb on - strand at 976.971 kb on + strand, within Shewana3_0843 at 977.001 kb on + strand, within Shewana3_0843 at 977.059 kb on + strand, within Shewana3_0843 at 977.059 kb on + strand, within Shewana3_0843 at 977.225 kb on + strand, within Shewana3_0843 at 977.330 kb on + strand, within Shewana3_0843 at 977.404 kb on - strand, within Shewana3_0843 at 977.518 kb on + strand, within Shewana3_0843 at 977.553 kb on + strand, within Shewana3_0843 at 977.731 kb on - strand at 977.774 kb on - strand at 977.808 kb on + strand at 977.857 kb on - strand, within Shewana3_0844 at 977.889 kb on - strand, within Shewana3_0844 at 977.906 kb on + strand, within Shewana3_0844 at 978.013 kb on - strand, within Shewana3_0844 at 978.038 kb on + strand, within Shewana3_0844 at 978.079 kb on - strand, within Shewana3_0844 at 978.090 kb on + strand, within Shewana3_0844 at 978.142 kb on - strand, within Shewana3_0844 at 978.241 kb on - strand, within Shewana3_0844 at 978.459 kb on - strand, within Shewana3_0844 at 978.517 kb on - strand, within Shewana3_0844 at 978.529 kb on - strand, within Shewana3_0844 at 978.529 kb on - strand, within Shewana3_0844 at 978.531 kb on + strand, within Shewana3_0844 at 978.539 kb on - strand, within Shewana3_0844 at 978.539 kb on - strand, within Shewana3_0844 at 978.604 kb on + strand at 978.719 kb on - strand at 978.744 kb on - strand at 978.954 kb on + strand at 979.147 kb on - strand, within Shewana3_0845 at 979.172 kb on + strand, within Shewana3_0845 at 979.180 kb on - strand, within Shewana3_0845 at 979.295 kb on - strand, within Shewana3_0845 at 979.297 kb on + strand, within Shewana3_0845 at 979.649 kb on + strand, within Shewana3_0845 at 979.649 kb on + strand, within Shewana3_0845
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 976,790 + +0.1 976,816 - -3.5 976,827 - -3.5 976,971 + Shewana3_0843 0.19 -1.0 977,001 + Shewana3_0843 0.22 -5.0 977,059 + Shewana3_0843 0.29 -5.0 977,059 + Shewana3_0843 0.29 -6.8 977,225 + Shewana3_0843 0.49 -4.8 977,330 + Shewana3_0843 0.62 -5.6 977,404 - Shewana3_0843 0.71 -2.7 977,518 + Shewana3_0843 0.85 -4.9 977,553 + Shewana3_0843 0.89 -4.7 977,731 - -0.3 977,774 - +1.3 977,808 + +0.1 977,857 - Shewana3_0844 0.13 -1.5 977,889 - Shewana3_0844 0.16 -1.2 977,906 + Shewana3_0844 0.18 -2.0 978,013 - Shewana3_0844 0.30 -3.3 978,038 + Shewana3_0844 0.32 -1.4 978,079 - Shewana3_0844 0.37 -0.7 978,090 + Shewana3_0844 0.38 -0.4 978,142 - Shewana3_0844 0.44 -2.6 978,241 - Shewana3_0844 0.55 -1.6 978,459 - Shewana3_0844 0.78 -2.0 978,517 - Shewana3_0844 0.85 -3.1 978,529 - Shewana3_0844 0.86 -1.9 978,529 - Shewana3_0844 0.86 -1.0 978,531 + Shewana3_0844 0.86 -2.4 978,539 - Shewana3_0844 0.87 -2.7 978,539 - Shewana3_0844 0.87 -3.8 978,604 + -0.6 978,719 - +1.2 978,744 - +1.0 978,954 + +0.5 979,147 - Shewana3_0845 0.21 -0.2 979,172 + Shewana3_0845 0.22 +1.0 979,180 - Shewana3_0845 0.23 -1.4 979,295 - Shewana3_0845 0.30 +0.6 979,297 + Shewana3_0845 0.30 +0.1 979,649 + Shewana3_0845 0.53 +2.1 979,649 + Shewana3_0845 0.53 +1.0
Or see this region's nucleotide sequence