Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0810 and Shewana3_0811 are separated by 405 nucleotides Shewana3_0811 and Shewana3_0812 are separated by 247 nucleotides
Shewana3_0810: Shewana3_0810 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 935,224 to 936,960
_0810
Shewana3_0811: Shewana3_0811 - hypothetical protein (RefSeq), at 937,366 to 938,412
_0811
Shewana3_0812: Shewana3_0812 - cysteine/glutathione ABC transporter membrane/ATP-binding component (RefSeq), at 938,660 to 940,621
_0812
Position (kb) 937
938
939 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 936.546 kb on + strand, within Shewana3_0810 at 936.554 kb on - strand, within Shewana3_0810 at 936.593 kb on - strand, within Shewana3_0810 at 936.721 kb on + strand, within Shewana3_0810 at 936.792 kb on + strand at 936.892 kb on - strand at 936.903 kb on - strand at 936.910 kb on + strand at 936.935 kb on + strand at 936.993 kb on - strand at 937.330 kb on - strand at 937.348 kb on + strand at 937.378 kb on - strand at 937.558 kb on - strand, within Shewana3_0811 at 937.666 kb on + strand, within Shewana3_0811 at 937.692 kb on - strand, within Shewana3_0811 at 937.703 kb on - strand, within Shewana3_0811 at 937.752 kb on + strand, within Shewana3_0811 at 937.756 kb on - strand, within Shewana3_0811 at 937.911 kb on + strand, within Shewana3_0811 at 938.054 kb on - strand, within Shewana3_0811 at 938.180 kb on + strand, within Shewana3_0811 at 938.363 kb on + strand at 938.371 kb on - strand at 938.432 kb on - strand at 938.515 kb on + strand at 938.526 kb on + strand at 938.874 kb on - strand, within Shewana3_0812 at 939.188 kb on + strand, within Shewana3_0812 at 939.341 kb on - strand, within Shewana3_0812 at 939.359 kb on - strand, within Shewana3_0812
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 936,546 + Shewana3_0810 0.76 +0.4 936,554 - Shewana3_0810 0.77 +0.4 936,593 - Shewana3_0810 0.79 -0.2 936,721 + Shewana3_0810 0.86 +1.2 936,792 + -0.4 936,892 - -0.8 936,903 - +0.2 936,910 + +1.4 936,935 + +0.2 936,993 - +1.2 937,330 - -0.9 937,348 + +3.4 937,378 - -0.4 937,558 - Shewana3_0811 0.18 +0.3 937,666 + Shewana3_0811 0.29 -1.3 937,692 - Shewana3_0811 0.31 +0.3 937,703 - Shewana3_0811 0.32 -0.7 937,752 + Shewana3_0811 0.37 -0.3 937,756 - Shewana3_0811 0.37 -3.3 937,911 + Shewana3_0811 0.52 -1.7 938,054 - Shewana3_0811 0.66 -0.2 938,180 + Shewana3_0811 0.78 +0.8 938,363 + -0.2 938,371 - -1.1 938,432 - -1.0 938,515 + +0.4 938,526 + +1.1 938,874 - Shewana3_0812 0.11 -2.9 939,188 + Shewana3_0812 0.27 -1.5 939,341 - Shewana3_0812 0.35 -1.2 939,359 - Shewana3_0812 0.36 -1.4
Or see this region's nucleotide sequence