Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0806

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0805 and Shewana3_0806 are separated by 57 nucleotidesShewana3_0806 and Shewana3_0807 are separated by 110 nucleotidesShewana3_0807 and Shewana3_0808 are separated by 67 nucleotides Shewana3_0805: Shewana3_0805 - hypothetical protein (RefSeq), at 928,775 to 929,947 _0805 Shewana3_0806: Shewana3_0806 - peptidase M19, renal dipeptidase (RefSeq), at 930,005 to 931,168 _0806 Shewana3_0807: Shewana3_0807 - Fe-S metabolism associated SufE (RefSeq), at 931,279 to 931,722 _0807 Shewana3_0808: Shewana3_0808 - cysteine desulfurase (RefSeq), at 931,790 to 933,037 _0808 Position (kb) 930 931 932Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 929.029 kb on + strand, within Shewana3_0805at 929.066 kb on + strand, within Shewana3_0805at 929.386 kb on + strand, within Shewana3_0805at 929.386 kb on + strand, within Shewana3_0805at 929.891 kb on + strandat 929.891 kb on + strandat 929.891 kb on + strandat 929.899 kb on - strandat 929.950 kb on - strandat 930.070 kb on + strandat 930.078 kb on - strandat 930.080 kb on + strandat 930.184 kb on + strand, within Shewana3_0806at 930.444 kb on + strand, within Shewana3_0806at 930.488 kb on + strand, within Shewana3_0806at 931.217 kb on + strandat 931.217 kb on + strandat 931.340 kb on + strand, within Shewana3_0807at 931.394 kb on - strand, within Shewana3_0807at 931.427 kb on + strand, within Shewana3_0807at 931.442 kb on + strand, within Shewana3_0807at 931.458 kb on - strand, within Shewana3_0807at 931.545 kb on - strand, within Shewana3_0807at 931.788 kb on + strandat 931.796 kb on - strandat 931.796 kb on - strandat 931.796 kb on - strandat 931.891 kb on + strandat 931.899 kb on - strandat 931.899 kb on - strandat 931.899 kb on - strandat 931.910 kb on + strandat 931.996 kb on + strand, within Shewana3_0808at 932.042 kb on - strand, within Shewana3_0808at 932.071 kb on + strand, within Shewana3_0808

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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929,029 + Shewana3_0805 0.22 +1.9
929,066 + Shewana3_0805 0.25 -1.0
929,386 + Shewana3_0805 0.52 -0.2
929,386 + Shewana3_0805 0.52 +0.9
929,891 + -1.1
929,891 + -1.2
929,891 + -0.0
929,899 - +1.2
929,950 - +0.9
930,070 + +0.2
930,078 - -0.6
930,080 + -0.8
930,184 + Shewana3_0806 0.15 -0.0
930,444 + Shewana3_0806 0.38 -0.2
930,488 + Shewana3_0806 0.41 +0.2
931,217 + -0.1
931,217 + +0.5
931,340 + Shewana3_0807 0.14 -3.4
931,394 - Shewana3_0807 0.26 +1.0
931,427 + Shewana3_0807 0.33 -2.1
931,442 + Shewana3_0807 0.37 -2.1
931,458 - Shewana3_0807 0.40 -2.0
931,545 - Shewana3_0807 0.60 -0.4
931,788 + +0.7
931,796 - +0.5
931,796 - +0.5
931,796 - +0.5
931,891 + -3.7
931,899 - +0.0
931,899 - -3.3
931,899 - -2.3
931,910 + -3.1
931,996 + Shewana3_0808 0.17 -0.9
932,042 - Shewana3_0808 0.20 -2.3
932,071 + Shewana3_0808 0.23 -1.8

Or see this region's nucleotide sequence