Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0804

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0803 and Shewana3_0804 are separated by 145 nucleotidesShewana3_0804 and Shewana3_0805 are separated by 24 nucleotides Shewana3_0803: Shewana3_0803 - MORN repeat-containing protein (RefSeq), at 926,008 to 928,281 _0803 Shewana3_0804: Shewana3_0804 - cupin 2 domain-containing protein (RefSeq), at 928,427 to 928,750 _0804 Shewana3_0805: Shewana3_0805 - hypothetical protein (RefSeq), at 928,775 to 929,947 _0805 Position (kb) 928 929Strain fitness (log2 ratio) -2 -1 0 1 2at 927.633 kb on + strand, within Shewana3_0803at 927.714 kb on - strand, within Shewana3_0803at 927.814 kb on + strand, within Shewana3_0803at 927.822 kb on - strand, within Shewana3_0803at 927.831 kb on - strand, within Shewana3_0803at 927.903 kb on - strand, within Shewana3_0803at 927.903 kb on - strand, within Shewana3_0803at 928.019 kb on + strand, within Shewana3_0803at 928.019 kb on + strand, within Shewana3_0803at 928.027 kb on - strand, within Shewana3_0803at 928.027 kb on - strand, within Shewana3_0803at 928.095 kb on - strandat 928.177 kb on - strandat 928.198 kb on + strandat 928.208 kb on + strandat 928.504 kb on + strand, within Shewana3_0804at 928.512 kb on - strand, within Shewana3_0804at 928.646 kb on - strand, within Shewana3_0804at 928.646 kb on - strand, within Shewana3_0804at 928.670 kb on - strand, within Shewana3_0804at 928.694 kb on - strand, within Shewana3_0804at 928.716 kb on - strand, within Shewana3_0804at 928.920 kb on + strand, within Shewana3_0805at 929.029 kb on + strand, within Shewana3_0805at 929.066 kb on + strand, within Shewana3_0805at 929.386 kb on + strand, within Shewana3_0805at 929.386 kb on + strand, within Shewana3_0805

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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927,633 + Shewana3_0803 0.71 +1.0
927,714 - Shewana3_0803 0.75 -0.6
927,814 + Shewana3_0803 0.79 -1.7
927,822 - Shewana3_0803 0.80 -1.3
927,831 - Shewana3_0803 0.80 -0.1
927,903 - Shewana3_0803 0.83 -2.6
927,903 - Shewana3_0803 0.83 +0.5
928,019 + Shewana3_0803 0.88 -0.7
928,019 + Shewana3_0803 0.88 -0.7
928,027 - Shewana3_0803 0.89 -0.8
928,027 - Shewana3_0803 0.89 +0.7
928,095 - +0.8
928,177 - +0.9
928,198 + +0.1
928,208 + +0.4
928,504 + Shewana3_0804 0.24 +0.7
928,512 - Shewana3_0804 0.26 -0.1
928,646 - Shewana3_0804 0.68 -1.4
928,646 - Shewana3_0804 0.68 +1.3
928,670 - Shewana3_0804 0.75 -0.3
928,694 - Shewana3_0804 0.82 +0.5
928,716 - Shewana3_0804 0.89 -0.2
928,920 + Shewana3_0805 0.12 +1.2
929,029 + Shewana3_0805 0.22 +1.9
929,066 + Shewana3_0805 0.25 -1.0
929,386 + Shewana3_0805 0.52 -0.2
929,386 + Shewana3_0805 0.52 +0.9

Or see this region's nucleotide sequence