Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0760 and Shewana3_0761 are separated by 83 nucleotides Shewana3_0761 and Shewana3_0762 overlap by 4 nucleotides Shewana3_0762 and Shewana3_0763 overlap by 1 nucleotides
Shewana3_0760: Shewana3_0760 - ribosomal small subunit pseudouridine synthase A (RefSeq), at 882,233 to 882,940
_0760
Shewana3_0761: Shewana3_0761 - hypothetical protein (RefSeq), at 883,024 to 883,980
_0761
Shewana3_0762: Shewana3_0762 - hypothetical protein (RefSeq), at 883,977 to 884,555
_0762
Shewana3_0763: Shewana3_0763 - ECF subfamily RNA polymerase sigma-24 factor (RefSeq), at 884,555 to 885,088
_0763
Position (kb) 883
884 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 882.128 kb on + strand at 882.184 kb on + strand at 882.336 kb on - strand, within Shewana3_0760 at 882.373 kb on + strand, within Shewana3_0760 at 882.442 kb on + strand, within Shewana3_0760 at 882.502 kb on - strand, within Shewana3_0760 at 882.598 kb on - strand, within Shewana3_0760 at 882.824 kb on + strand, within Shewana3_0760 at 882.842 kb on + strand, within Shewana3_0760 at 882.884 kb on + strand at 882.904 kb on - strand at 883.973 kb on - strand at 884.234 kb on - strand, within Shewana3_0762 at 884.782 kb on - strand, within Shewana3_0763 at 884.830 kb on + strand, within Shewana3_0763 at 884.838 kb on - strand, within Shewana3_0763 at 884.838 kb on - strand, within Shewana3_0763 at 884.838 kb on - strand, within Shewana3_0763 at 884.868 kb on + strand, within Shewana3_0763 at 884.899 kb on + strand, within Shewana3_0763 at 884.964 kb on + strand, within Shewana3_0763 at 884.964 kb on + strand, within Shewana3_0763 at 884.972 kb on - strand, within Shewana3_0763
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 882,128 + +0.2 882,184 + +0.5 882,336 - Shewana3_0760 0.15 +1.5 882,373 + Shewana3_0760 0.20 +1.1 882,442 + Shewana3_0760 0.30 -1.0 882,502 - Shewana3_0760 0.38 -0.0 882,598 - Shewana3_0760 0.52 +1.7 882,824 + Shewana3_0760 0.83 -0.3 882,842 + Shewana3_0760 0.86 -0.2 882,884 + +0.3 882,904 - -1.4 883,973 - -2.5 884,234 - Shewana3_0762 0.44 -4.5 884,782 - Shewana3_0763 0.43 -0.1 884,830 + Shewana3_0763 0.51 +0.4 884,838 - Shewana3_0763 0.53 +0.5 884,838 - Shewana3_0763 0.53 -1.3 884,838 - Shewana3_0763 0.53 -1.5 884,868 + Shewana3_0763 0.59 +0.4 884,899 + Shewana3_0763 0.64 -0.6 884,964 + Shewana3_0763 0.77 +0.0 884,964 + Shewana3_0763 0.77 +0.6 884,972 - Shewana3_0763 0.78 -1.3
Or see this region's nucleotide sequence