Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0611 and astD are separated by 9 nucleotides astD and Shewana3_0613 are separated by 164 nucleotides
Shewana3_0611: Shewana3_0611 - Arginine N-succinyltransferase (EC 2.3.1.109) <small>(from data)</small>, at 716,221 to 717,240
_0611
Shewana3_0612: astD - succinylglutamic semialdehyde dehydrogenase (RefSeq), at 717,250 to 718,713
astD
Shewana3_0613: Shewana3_0613 - hypothetical protein (RefSeq), at 718,878 to 719,681
_0613
Position (kb) 717
718
719 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 716.294 kb on + strand at 716.549 kb on + strand, within Shewana3_0611 at 716.549 kb on + strand, within Shewana3_0611 at 716.549 kb on + strand, within Shewana3_0611 at 716.557 kb on - strand, within Shewana3_0611 at 716.882 kb on - strand, within Shewana3_0611 at 716.905 kb on + strand, within Shewana3_0611 at 716.926 kb on + strand, within Shewana3_0611 at 716.959 kb on - strand, within Shewana3_0611 at 716.960 kb on + strand, within Shewana3_0611 at 717.173 kb on - strand at 717.634 kb on + strand, within astD at 717.642 kb on - strand, within astD at 717.669 kb on + strand, within astD at 717.676 kb on - strand, within astD at 717.838 kb on + strand, within astD at 717.838 kb on + strand, within astD at 717.971 kb on - strand, within astD at 718.041 kb on - strand, within astD at 718.074 kb on + strand, within astD at 718.074 kb on + strand, within astD at 718.095 kb on + strand, within astD at 718.143 kb on + strand, within astD at 718.169 kb on - strand, within astD at 718.169 kb on - strand, within astD at 718.325 kb on + strand, within astD at 718.447 kb on - strand, within astD at 718.972 kb on - strand, within Shewana3_0613 at 719.203 kb on + strand, within Shewana3_0613 at 719.299 kb on + strand, within Shewana3_0613 at 719.338 kb on + strand, within Shewana3_0613 at 719.366 kb on + strand, within Shewana3_0613 at 719.398 kb on - strand, within Shewana3_0613 at 719.407 kb on - strand, within Shewana3_0613 at 719.442 kb on + strand, within Shewana3_0613 at 719.456 kb on - strand, within Shewana3_0613 at 719.620 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 716,294 + -0.1 716,549 + Shewana3_0611 0.32 -1.2 716,549 + Shewana3_0611 0.32 -2.2 716,549 + Shewana3_0611 0.32 -2.5 716,557 - Shewana3_0611 0.33 -0.0 716,882 - Shewana3_0611 0.65 -0.2 716,905 + Shewana3_0611 0.67 -2.7 716,926 + Shewana3_0611 0.69 -2.1 716,959 - Shewana3_0611 0.72 -2.2 716,960 + Shewana3_0611 0.72 +0.1 717,173 - -1.4 717,634 + astD Shewana3_0612 0.26 -4.2 717,642 - astD Shewana3_0612 0.27 -1.2 717,669 + astD Shewana3_0612 0.29 -4.3 717,676 - astD Shewana3_0612 0.29 -4.1 717,838 + astD Shewana3_0612 0.40 -1.4 717,838 + astD Shewana3_0612 0.40 +0.9 717,971 - astD Shewana3_0612 0.49 -3.5 718,041 - astD Shewana3_0612 0.54 -1.9 718,074 + astD Shewana3_0612 0.56 -3.9 718,074 + astD Shewana3_0612 0.56 -0.9 718,095 + astD Shewana3_0612 0.58 -2.3 718,143 + astD Shewana3_0612 0.61 -4.1 718,169 - astD Shewana3_0612 0.63 -2.4 718,169 - astD Shewana3_0612 0.63 -2.2 718,325 + astD Shewana3_0612 0.73 -1.1 718,447 - astD Shewana3_0612 0.82 -1.9 718,972 - Shewana3_0613 0.12 -0.4 719,203 + Shewana3_0613 0.40 -1.5 719,299 + Shewana3_0613 0.52 -1.6 719,338 + Shewana3_0613 0.57 +0.8 719,366 + Shewana3_0613 0.61 -1.9 719,398 - Shewana3_0613 0.65 -1.1 719,407 - Shewana3_0613 0.66 -0.1 719,442 + Shewana3_0613 0.70 -0.7 719,456 - Shewana3_0613 0.72 +0.2 719,620 - -1.7
Or see this region's nucleotide sequence