Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0595

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0594 and mutL are separated by 13 nucleotidesmutL and miaA are separated by 28 nucleotides Shewana3_0594: Shewana3_0594 - cell wall hydrolase/autolysin (RefSeq), at 696,509 to 697,900 _0594 Shewana3_0595: mutL - DNA mismatch repair protein (RefSeq), at 697,914 to 699,860 mutL Shewana3_0596: miaA - tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq), at 699,889 to 700,779 miaA Position (kb) 697 698 699 700Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7at 697.979 kb on + strandat 698.158 kb on + strand, within mutLat 698.158 kb on + strand, within mutLat 698.166 kb on - strand, within mutLat 698.448 kb on + strand, within mutLat 698.456 kb on - strand, within mutLat 698.652 kb on + strand, within mutLat 698.652 kb on + strand, within mutLat 698.655 kb on - strand, within mutLat 698.702 kb on - strand, within mutLat 698.956 kb on - strand, within mutLat 698.956 kb on - strand, within mutLat 698.977 kb on - strand, within mutLat 698.987 kb on + strand, within mutLat 698.987 kb on + strand, within mutLat 699.225 kb on + strand, within mutLat 699.253 kb on + strand, within mutLat 699.307 kb on - strand, within mutLat 699.317 kb on - strand, within mutLat 699.368 kb on - strand, within mutLat 699.539 kb on + strand, within mutLat 699.547 kb on - strand, within mutLat 699.687 kb on + strandat 699.722 kb on + strandat 700.004 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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697,979 + +0.7
698,158 + mutL Shewana3_0595 0.13 +0.9
698,158 + mutL Shewana3_0595 0.13 +0.8
698,166 - mutL Shewana3_0595 0.13 +4.4
698,448 + mutL Shewana3_0595 0.27 +0.9
698,456 - mutL Shewana3_0595 0.28 +1.7
698,652 + mutL Shewana3_0595 0.38 +2.6
698,652 + mutL Shewana3_0595 0.38 +0.4
698,655 - mutL Shewana3_0595 0.38 +0.9
698,702 - mutL Shewana3_0595 0.40 +1.9
698,956 - mutL Shewana3_0595 0.54 -1.2
698,956 - mutL Shewana3_0595 0.54 +0.3
698,977 - mutL Shewana3_0595 0.55 +0.3
698,987 + mutL Shewana3_0595 0.55 +3.4
698,987 + mutL Shewana3_0595 0.55 -0.4
699,225 + mutL Shewana3_0595 0.67 +0.7
699,253 + mutL Shewana3_0595 0.69 +0.4
699,307 - mutL Shewana3_0595 0.72 +1.7
699,317 - mutL Shewana3_0595 0.72 -0.1
699,368 - mutL Shewana3_0595 0.75 -0.2
699,539 + mutL Shewana3_0595 0.83 +1.1
699,547 - mutL Shewana3_0595 0.84 +6.9
699,687 + -0.2
699,722 + +0.8
700,004 + -0.8

Or see this region's nucleotide sequence