Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0562

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0561 and Shewana3_0562 are separated by 221 nucleotidesShewana3_0562 and Shewana3_0563 are separated by 80 nucleotidesShewana3_0563 and Shewana3_0564 are separated by 255 nucleotidesShewana3_0564 and Shewana3_0565 are separated by 81 nucleotides Shewana3_0561: Shewana3_0561 - MscS mechanosensitive ion channel (RefSeq), at 654,980 to 656,635 _0561 Shewana3_0562: Shewana3_0562 - hypothetical protein (RefSeq), at 656,857 to 657,186 _0562 Shewana3_0563: Shewana3_0563 - hypothetical protein (RefSeq), at 657,267 to 657,392 _0563 Shewana3_0564: Shewana3_0564 - hypothetical protein (RefSeq), at 657,648 to 657,938 _0564 Shewana3_0565: Shewana3_0565 - hypothetical protein (RefSeq), at 658,020 to 659,201 _0565 Position (kb) 656 657 658Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 656.233 kb on - strand, within Shewana3_0561at 656.672 kb on - strandat 656.696 kb on + strandat 656.750 kb on - strandat 656.972 kb on + strand, within Shewana3_0562at 656.980 kb on - strand, within Shewana3_0562at 657.033 kb on - strand, within Shewana3_0562at 657.227 kb on - strandat 657.254 kb on + strandat 657.254 kb on + strandat 657.262 kb on - strandat 657.262 kb on - strandat 657.398 kb on - strandat 657.418 kb on - strandat 657.437 kb on + strandat 657.437 kb on + strandat 657.437 kb on + strandat 657.445 kb on - strandat 657.445 kb on - strandat 657.445 kb on - strandat 657.447 kb on + strandat 657.615 kb on - strandat 657.642 kb on + strandat 657.777 kb on - strand, within Shewana3_0564at 657.896 kb on + strand, within Shewana3_0564at 657.896 kb on + strand, within Shewana3_0564at 657.904 kb on - strand, within Shewana3_0564at 657.909 kb on - strand, within Shewana3_0564at 658.123 kb on + strandat 658.136 kb on - strandat 658.183 kb on + strand, within Shewana3_0565

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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656,233 - Shewana3_0561 0.76 +0.2
656,672 - -3.8
656,696 + +0.9
656,750 - -0.4
656,972 + Shewana3_0562 0.35 +0.4
656,980 - Shewana3_0562 0.37 -1.4
657,033 - Shewana3_0562 0.53 -0.9
657,227 - -0.8
657,254 + +0.5
657,254 + -1.9
657,262 - +0.6
657,262 - +0.4
657,398 - +0.3
657,418 - +0.1
657,437 + +0.4
657,437 + +1.0
657,437 + +1.3
657,445 - -1.5
657,445 - +0.3
657,445 - +3.2
657,447 + -0.8
657,615 - +0.6
657,642 + +0.3
657,777 - Shewana3_0564 0.44 -1.3
657,896 + Shewana3_0564 0.85 +0.6
657,896 + Shewana3_0564 0.85 +0.4
657,904 - Shewana3_0564 0.88 -0.6
657,909 - Shewana3_0564 0.90 -0.5
658,123 + -0.7
658,136 - +0.4
658,183 + Shewana3_0565 0.14 +0.7

Or see this region's nucleotide sequence