Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0559 and Shewana3_0560 are separated by 240 nucleotides Shewana3_0560 and Shewana3_0561 are separated by 79 nucleotides
Shewana3_0559: Shewana3_0559 - aldo/keto reductase (RefSeq), at 652,057 to 652,947
_0559
Shewana3_0560: Shewana3_0560 - formate--tetrahydrofolate ligase (RefSeq), at 653,188 to 654,900
_0560
Shewana3_0561: Shewana3_0561 - MscS mechanosensitive ion channel (RefSeq), at 654,980 to 656,635
_0561
Position (kb) 653
654
655 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 652.260 kb on + strand, within Shewana3_0559 at 652.317 kb on - strand, within Shewana3_0559 at 652.345 kb on - strand, within Shewana3_0559 at 652.345 kb on - strand, within Shewana3_0559 at 652.360 kb on - strand, within Shewana3_0559 at 652.506 kb on - strand, within Shewana3_0559 at 652.626 kb on + strand, within Shewana3_0559 at 652.668 kb on + strand, within Shewana3_0559 at 652.676 kb on - strand, within Shewana3_0559 at 652.836 kb on + strand, within Shewana3_0559 at 652.836 kb on + strand, within Shewana3_0559 at 652.856 kb on + strand, within Shewana3_0559 at 653.325 kb on + strand at 653.452 kb on - strand, within Shewana3_0560 at 653.462 kb on + strand, within Shewana3_0560 at 653.480 kb on - strand, within Shewana3_0560 at 653.540 kb on - strand, within Shewana3_0560 at 653.594 kb on + strand, within Shewana3_0560 at 653.626 kb on + strand, within Shewana3_0560 at 653.652 kb on - strand, within Shewana3_0560 at 653.652 kb on - strand, within Shewana3_0560 at 653.655 kb on + strand, within Shewana3_0560 at 653.725 kb on - strand, within Shewana3_0560 at 653.747 kb on + strand, within Shewana3_0560 at 653.791 kb on + strand, within Shewana3_0560 at 653.944 kb on - strand, within Shewana3_0560 at 654.144 kb on - strand, within Shewana3_0560 at 654.215 kb on + strand, within Shewana3_0560 at 654.215 kb on + strand, within Shewana3_0560 at 654.493 kb on - strand, within Shewana3_0560 at 654.527 kb on + strand, within Shewana3_0560 at 654.537 kb on + strand, within Shewana3_0560 at 654.590 kb on - strand, within Shewana3_0560 at 654.604 kb on + strand, within Shewana3_0560 at 654.718 kb on - strand, within Shewana3_0560 at 654.812 kb on - strand at 654.812 kb on - strand at 654.844 kb on - strand at 654.849 kb on - strand at 655.186 kb on + strand, within Shewana3_0561 at 655.204 kb on - strand, within Shewana3_0561 at 655.285 kb on - strand, within Shewana3_0561 at 655.328 kb on + strand, within Shewana3_0561 at 655.731 kb on - strand, within Shewana3_0561 at 655.759 kb on - strand, within Shewana3_0561
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 652,260 + Shewana3_0559 0.23 -0.1 652,317 - Shewana3_0559 0.29 -1.2 652,345 - Shewana3_0559 0.32 -1.0 652,345 - Shewana3_0559 0.32 +0.1 652,360 - Shewana3_0559 0.34 +3.0 652,506 - Shewana3_0559 0.50 +0.2 652,626 + Shewana3_0559 0.64 -0.0 652,668 + Shewana3_0559 0.69 +0.0 652,676 - Shewana3_0559 0.69 -0.9 652,836 + Shewana3_0559 0.87 +0.5 652,836 + Shewana3_0559 0.87 +0.8 652,856 + Shewana3_0559 0.90 -2.8 653,325 + -1.5 653,452 - Shewana3_0560 0.15 -0.6 653,462 + Shewana3_0560 0.16 -0.0 653,480 - Shewana3_0560 0.17 -1.5 653,540 - Shewana3_0560 0.21 +0.9 653,594 + Shewana3_0560 0.24 -2.0 653,626 + Shewana3_0560 0.26 -1.5 653,652 - Shewana3_0560 0.27 -0.4 653,652 - Shewana3_0560 0.27 +1.8 653,655 + Shewana3_0560 0.27 -0.6 653,725 - Shewana3_0560 0.31 -0.4 653,747 + Shewana3_0560 0.33 -2.9 653,791 + Shewana3_0560 0.35 +0.4 653,944 - Shewana3_0560 0.44 -0.9 654,144 - Shewana3_0560 0.56 +0.5 654,215 + Shewana3_0560 0.60 -0.2 654,215 + Shewana3_0560 0.60 -2.5 654,493 - Shewana3_0560 0.76 +1.8 654,527 + Shewana3_0560 0.78 -0.6 654,537 + Shewana3_0560 0.79 -1.4 654,590 - Shewana3_0560 0.82 +0.1 654,604 + Shewana3_0560 0.83 -0.8 654,718 - Shewana3_0560 0.89 -0.8 654,812 - +1.3 654,812 - +0.2 654,844 - -2.2 654,849 - -0.4 655,186 + Shewana3_0561 0.12 -1.6 655,204 - Shewana3_0561 0.14 -3.4 655,285 - Shewana3_0561 0.18 -0.8 655,328 + Shewana3_0561 0.21 -1.4 655,731 - Shewana3_0561 0.45 +0.3 655,759 - Shewana3_0561 0.47 -1.3
Or see this region's nucleotide sequence