Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0558 and Shewana3_0559 are separated by 54 nucleotides Shewana3_0559 and Shewana3_0560 are separated by 240 nucleotides
Shewana3_0558: Shewana3_0558 - dehydratase (RefSeq), at 651,139 to 652,002
_0558
Shewana3_0559: Shewana3_0559 - aldo/keto reductase (RefSeq), at 652,057 to 652,947
_0559
Shewana3_0560: Shewana3_0560 - formate--tetrahydrofolate ligase (RefSeq), at 653,188 to 654,900
_0560
Position (kb) 652
653 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 651.136 kb on + strand at 651.191 kb on - strand at 651.237 kb on - strand, within Shewana3_0558 at 651.240 kb on - strand, within Shewana3_0558 at 651.339 kb on + strand, within Shewana3_0558 at 651.728 kb on + strand, within Shewana3_0558 at 651.767 kb on - strand, within Shewana3_0558 at 651.811 kb on - strand, within Shewana3_0558 at 651.818 kb on + strand, within Shewana3_0558 at 651.940 kb on + strand at 652.004 kb on - strand at 652.062 kb on - strand at 652.110 kb on + strand at 652.260 kb on + strand, within Shewana3_0559 at 652.317 kb on - strand, within Shewana3_0559 at 652.345 kb on - strand, within Shewana3_0559 at 652.345 kb on - strand, within Shewana3_0559 at 652.360 kb on - strand, within Shewana3_0559 at 652.506 kb on - strand, within Shewana3_0559 at 652.626 kb on + strand, within Shewana3_0559 at 652.668 kb on + strand, within Shewana3_0559 at 652.676 kb on - strand, within Shewana3_0559 at 652.836 kb on + strand, within Shewana3_0559 at 652.836 kb on + strand, within Shewana3_0559 at 652.856 kb on + strand, within Shewana3_0559 at 653.325 kb on + strand at 653.452 kb on - strand, within Shewana3_0560 at 653.462 kb on + strand, within Shewana3_0560 at 653.480 kb on - strand, within Shewana3_0560 at 653.540 kb on - strand, within Shewana3_0560 at 653.594 kb on + strand, within Shewana3_0560 at 653.626 kb on + strand, within Shewana3_0560 at 653.652 kb on - strand, within Shewana3_0560 at 653.652 kb on - strand, within Shewana3_0560 at 653.655 kb on + strand, within Shewana3_0560 at 653.725 kb on - strand, within Shewana3_0560 at 653.747 kb on + strand, within Shewana3_0560 at 653.791 kb on + strand, within Shewana3_0560 at 653.944 kb on - strand, within Shewana3_0560
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 651,136 + -0.1 651,191 - +0.3 651,237 - Shewana3_0558 0.11 -1.1 651,240 - Shewana3_0558 0.12 +0.7 651,339 + Shewana3_0558 0.23 -0.4 651,728 + Shewana3_0558 0.68 -0.1 651,767 - Shewana3_0558 0.73 -1.1 651,811 - Shewana3_0558 0.78 -0.8 651,818 + Shewana3_0558 0.79 -0.4 651,940 + -0.6 652,004 - +0.6 652,062 - +0.1 652,110 + -0.8 652,260 + Shewana3_0559 0.23 -0.1 652,317 - Shewana3_0559 0.29 -1.2 652,345 - Shewana3_0559 0.32 -1.0 652,345 - Shewana3_0559 0.32 +0.1 652,360 - Shewana3_0559 0.34 +3.0 652,506 - Shewana3_0559 0.50 +0.2 652,626 + Shewana3_0559 0.64 -0.0 652,668 + Shewana3_0559 0.69 +0.0 652,676 - Shewana3_0559 0.69 -0.9 652,836 + Shewana3_0559 0.87 +0.5 652,836 + Shewana3_0559 0.87 +0.8 652,856 + Shewana3_0559 0.90 -2.8 653,325 + -1.5 653,452 - Shewana3_0560 0.15 -0.6 653,462 + Shewana3_0560 0.16 -0.0 653,480 - Shewana3_0560 0.17 -1.5 653,540 - Shewana3_0560 0.21 +0.9 653,594 + Shewana3_0560 0.24 -2.0 653,626 + Shewana3_0560 0.26 -1.5 653,652 - Shewana3_0560 0.27 -0.4 653,652 - Shewana3_0560 0.27 +1.8 653,655 + Shewana3_0560 0.27 -0.6 653,725 - Shewana3_0560 0.31 -0.4 653,747 + Shewana3_0560 0.33 -2.9 653,791 + Shewana3_0560 0.35 +0.4 653,944 - Shewana3_0560 0.44 -0.9
Or see this region's nucleotide sequence