Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0475 and Shewana3_0476 are separated by 242 nucleotides Shewana3_0476 and Shewana3_0477 are separated by 215 nucleotides
Shewana3_0475: Shewana3_0475 - hypothetical protein (RefSeq), at 552,181 to 553,326
_0475
Shewana3_0476: Shewana3_0476 - redoxin domain-containing protein (RefSeq), at 553,569 to 554,489
_0476
Shewana3_0477: Shewana3_0477 - hypothetical protein (RefSeq), at 554,705 to 555,811
_0477
Position (kb) 553
554
555 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 552.827 kb on + strand, within Shewana3_0475 at 552.827 kb on + strand, within Shewana3_0475 at 552.835 kb on - strand, within Shewana3_0475 at 552.835 kb on - strand, within Shewana3_0475 at 552.842 kb on - strand, within Shewana3_0475 at 553.023 kb on - strand, within Shewana3_0475 at 553.093 kb on + strand, within Shewana3_0475 at 553.116 kb on + strand, within Shewana3_0475 at 553.124 kb on - strand, within Shewana3_0475 at 553.244 kb on - strand at 553.288 kb on + strand at 553.289 kb on + strand at 553.316 kb on - strand at 553.335 kb on + strand at 553.341 kb on - strand at 553.487 kb on + strand at 553.855 kb on - strand, within Shewana3_0476 at 553.911 kb on + strand, within Shewana3_0476 at 553.926 kb on + strand, within Shewana3_0476 at 553.926 kb on + strand, within Shewana3_0476 at 553.934 kb on - strand, within Shewana3_0476 at 553.954 kb on - strand, within Shewana3_0476 at 553.983 kb on + strand, within Shewana3_0476 at 554.315 kb on + strand, within Shewana3_0476 at 554.315 kb on + strand, within Shewana3_0476 at 554.315 kb on + strand, within Shewana3_0476 at 554.323 kb on - strand, within Shewana3_0476 at 554.437 kb on - strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.479 kb on - strand at 554.479 kb on - strand at 554.479 kb on - strand at 554.479 kb on - strand at 554.479 kb on - strand at 554.479 kb on - strand at 554.479 kb on - strand at 554.479 kb on - strand at 554.554 kb on - strand at 554.607 kb on - strand at 554.612 kb on - strand at 554.989 kb on + strand, within Shewana3_0477 at 555.087 kb on - strand, within Shewana3_0477 at 555.283 kb on + strand, within Shewana3_0477 at 555.312 kb on + strand, within Shewana3_0477 at 555.410 kb on - strand, within Shewana3_0477
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 552,827 + Shewana3_0475 0.56 -0.7 552,827 + Shewana3_0475 0.56 -0.4 552,835 - Shewana3_0475 0.57 +0.8 552,835 - Shewana3_0475 0.57 -1.5 552,842 - Shewana3_0475 0.58 +0.2 553,023 - Shewana3_0475 0.73 +1.7 553,093 + Shewana3_0475 0.80 -0.6 553,116 + Shewana3_0475 0.82 +0.9 553,124 - Shewana3_0475 0.82 +1.4 553,244 - -1.2 553,288 + -0.7 553,289 + +0.1 553,316 - +1.9 553,335 + +0.5 553,341 - +1.7 553,487 + +0.7 553,855 - Shewana3_0476 0.31 +0.8 553,911 + Shewana3_0476 0.37 +0.1 553,926 + Shewana3_0476 0.39 +0.7 553,926 + Shewana3_0476 0.39 +0.5 553,934 - Shewana3_0476 0.40 +1.5 553,954 - Shewana3_0476 0.42 +0.3 553,983 + Shewana3_0476 0.45 +2.2 554,315 + Shewana3_0476 0.81 +0.9 554,315 + Shewana3_0476 0.81 +0.6 554,315 + Shewana3_0476 0.81 -0.1 554,323 - Shewana3_0476 0.82 +0.1 554,437 - +0.1 554,471 + +1.4 554,471 + +0.5 554,471 + -0.3 554,471 + +0.9 554,471 + +0.1 554,471 + -0.8 554,471 + +0.0 554,471 + +0.3 554,471 + -0.3 554,471 + +0.9 554,471 + +0.6 554,471 + +1.5 554,471 + -1.0 554,471 + +0.1 554,471 + -0.1 554,471 + -1.4 554,479 - +0.7 554,479 - +0.2 554,479 - +0.1 554,479 - +0.3 554,479 - -0.3 554,479 - -0.6 554,479 - -0.1 554,479 - +0.1 554,554 - +1.5 554,607 - -0.0 554,612 - +1.1 554,989 + Shewana3_0477 0.26 -0.0 555,087 - Shewana3_0477 0.35 -1.4 555,283 + Shewana3_0477 0.52 +0.1 555,312 + Shewana3_0477 0.55 -4.2 555,410 - Shewana3_0477 0.64 -0.3
Or see this region's nucleotide sequence