Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0474 and Shewana3_0475 are separated by 146 nucleotides Shewana3_0475 and Shewana3_0476 are separated by 242 nucleotides
Shewana3_0474: Shewana3_0474 - 2-nitropropane dioxygenase, NPD (RefSeq), at 550,973 to 552,034
_0474
Shewana3_0475: Shewana3_0475 - hypothetical protein (RefSeq), at 552,181 to 553,326
_0475
Shewana3_0476: Shewana3_0476 - redoxin domain-containing protein (RefSeq), at 553,569 to 554,489
_0476
Position (kb) 552
553
554 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 551.299 kb on + strand, within Shewana3_0474 at 551.299 kb on + strand, within Shewana3_0474 at 551.306 kb on + strand, within Shewana3_0474 at 551.306 kb on + strand, within Shewana3_0474 at 551.306 kb on + strand, within Shewana3_0474 at 551.307 kb on - strand, within Shewana3_0474 at 551.314 kb on - strand, within Shewana3_0474 at 551.341 kb on + strand, within Shewana3_0474 at 551.460 kb on + strand, within Shewana3_0474 at 551.680 kb on + strand, within Shewana3_0474 at 551.718 kb on - strand, within Shewana3_0474 at 551.759 kb on + strand, within Shewana3_0474 at 551.769 kb on - strand, within Shewana3_0474 at 551.853 kb on + strand, within Shewana3_0474 at 552.003 kb on + strand at 552.253 kb on + strand at 552.253 kb on + strand at 552.290 kb on - strand at 552.301 kb on + strand, within Shewana3_0475 at 552.309 kb on - strand, within Shewana3_0475 at 552.309 kb on - strand, within Shewana3_0475 at 552.335 kb on - strand, within Shewana3_0475 at 552.360 kb on + strand, within Shewana3_0475 at 552.415 kb on + strand, within Shewana3_0475 at 552.438 kb on + strand, within Shewana3_0475 at 552.553 kb on + strand, within Shewana3_0475 at 552.827 kb on + strand, within Shewana3_0475 at 552.827 kb on + strand, within Shewana3_0475 at 552.835 kb on - strand, within Shewana3_0475 at 552.835 kb on - strand, within Shewana3_0475 at 552.842 kb on - strand, within Shewana3_0475 at 553.023 kb on - strand, within Shewana3_0475 at 553.093 kb on + strand, within Shewana3_0475 at 553.116 kb on + strand, within Shewana3_0475 at 553.124 kb on - strand, within Shewana3_0475 at 553.244 kb on - strand at 553.288 kb on + strand at 553.289 kb on + strand at 553.316 kb on - strand at 553.335 kb on + strand at 553.341 kb on - strand at 553.487 kb on + strand at 553.855 kb on - strand, within Shewana3_0476 at 553.911 kb on + strand, within Shewana3_0476 at 553.926 kb on + strand, within Shewana3_0476 at 553.926 kb on + strand, within Shewana3_0476 at 553.934 kb on - strand, within Shewana3_0476 at 553.954 kb on - strand, within Shewana3_0476 at 553.983 kb on + strand, within Shewana3_0476 at 554.315 kb on + strand, within Shewana3_0476 at 554.315 kb on + strand, within Shewana3_0476 at 554.315 kb on + strand, within Shewana3_0476 at 554.323 kb on - strand, within Shewana3_0476
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 551,299 + Shewana3_0474 0.31 +1.1 551,299 + Shewana3_0474 0.31 -0.6 551,306 + Shewana3_0474 0.31 +0.4 551,306 + Shewana3_0474 0.31 +0.4 551,306 + Shewana3_0474 0.31 -0.2 551,307 - Shewana3_0474 0.31 +2.7 551,314 - Shewana3_0474 0.32 -2.0 551,341 + Shewana3_0474 0.35 +0.3 551,460 + Shewana3_0474 0.46 +0.2 551,680 + Shewana3_0474 0.67 -0.7 551,718 - Shewana3_0474 0.70 +1.5 551,759 + Shewana3_0474 0.74 -0.1 551,769 - Shewana3_0474 0.75 +1.5 551,853 + Shewana3_0474 0.83 -0.4 552,003 + +0.6 552,253 + +1.3 552,253 + -0.3 552,290 - +0.1 552,301 + Shewana3_0475 0.10 -1.1 552,309 - Shewana3_0475 0.11 +2.9 552,309 - Shewana3_0475 0.11 -1.4 552,335 - Shewana3_0475 0.13 -0.7 552,360 + Shewana3_0475 0.16 -1.2 552,415 + Shewana3_0475 0.20 +0.3 552,438 + Shewana3_0475 0.22 +1.2 552,553 + Shewana3_0475 0.32 -0.2 552,827 + Shewana3_0475 0.56 -0.7 552,827 + Shewana3_0475 0.56 -0.4 552,835 - Shewana3_0475 0.57 +0.8 552,835 - Shewana3_0475 0.57 -1.5 552,842 - Shewana3_0475 0.58 +0.2 553,023 - Shewana3_0475 0.73 +1.7 553,093 + Shewana3_0475 0.80 -0.6 553,116 + Shewana3_0475 0.82 +0.9 553,124 - Shewana3_0475 0.82 +1.4 553,244 - -1.2 553,288 + -0.7 553,289 + +0.1 553,316 - +1.9 553,335 + +0.5 553,341 - +1.7 553,487 + +0.7 553,855 - Shewana3_0476 0.31 +0.8 553,911 + Shewana3_0476 0.37 +0.1 553,926 + Shewana3_0476 0.39 +0.7 553,926 + Shewana3_0476 0.39 +0.5 553,934 - Shewana3_0476 0.40 +1.5 553,954 - Shewana3_0476 0.42 +0.3 553,983 + Shewana3_0476 0.45 +2.2 554,315 + Shewana3_0476 0.81 +0.9 554,315 + Shewana3_0476 0.81 +0.6 554,315 + Shewana3_0476 0.81 -0.1 554,323 - Shewana3_0476 0.82 +0.1
Or see this region's nucleotide sequence