Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ubiA and Shewana3_0471 are separated by 86 nucleotides Shewana3_0471 and Shewana3_0472 are separated by 67 nucleotides Shewana3_0472 and Shewana3_0473 are separated by 103 nucleotides Shewana3_0473 and Shewana3_0474 are separated by 373 nucleotides
Shewana3_0470: ubiA - 4-hydroxybenzoate octaprenyltransferase (RefSeq), at 547,026 to 547,886
ubiA
Shewana3_0471: Shewana3_0471 - hypothetical protein (RefSeq), at 547,973 to 548,398
_0471
Shewana3_0472: Shewana3_0472 - IS4 family transposase (RefSeq), at 548,466 to 550,079
_0472
Shewana3_0473: Shewana3_0473 - hypothetical protein (RefSeq), at 550,183 to 550,599
_0473
Shewana3_0474: Shewana3_0474 - 2-nitropropane dioxygenase, NPD (RefSeq), at 550,973 to 552,034
_0474
Position (kb) 548
549
550
551 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 547.888 kb on - strand at 547.927 kb on + strand at 548.042 kb on - strand, within Shewana3_0471 at 548.069 kb on + strand, within Shewana3_0471 at 548.091 kb on - strand, within Shewana3_0471 at 548.128 kb on + strand, within Shewana3_0471 at 548.143 kb on - strand, within Shewana3_0471 at 548.206 kb on + strand, within Shewana3_0471 at 548.214 kb on + strand, within Shewana3_0471 at 548.214 kb on - strand, within Shewana3_0471 at 548.216 kb on + strand, within Shewana3_0471 at 548.224 kb on - strand, within Shewana3_0471 at 548.263 kb on - strand, within Shewana3_0471 at 548.307 kb on + strand, within Shewana3_0471 at 548.307 kb on + strand, within Shewana3_0471 at 548.307 kb on + strand, within Shewana3_0471 at 548.307 kb on + strand, within Shewana3_0471 at 548.307 kb on + strand, within Shewana3_0471 at 548.307 kb on + strand, within Shewana3_0471 at 548.356 kb on + strand at 548.364 kb on - strand at 550.175 kb on + strand at 550.288 kb on + strand, within Shewana3_0473 at 550.288 kb on + strand, within Shewana3_0473 at 550.288 kb on + strand, within Shewana3_0473 at 550.296 kb on - strand, within Shewana3_0473 at 550.349 kb on - strand, within Shewana3_0473 at 550.356 kb on - strand, within Shewana3_0473 at 550.391 kb on + strand, within Shewana3_0473 at 550.391 kb on + strand, within Shewana3_0473 at 550.399 kb on - strand, within Shewana3_0473 at 550.425 kb on - strand, within Shewana3_0473 at 550.433 kb on - strand, within Shewana3_0473 at 550.466 kb on - strand, within Shewana3_0473 at 550.470 kb on + strand, within Shewana3_0473 at 550.470 kb on + strand, within Shewana3_0473 at 550.470 kb on + strand, within Shewana3_0473 at 550.470 kb on + strand, within Shewana3_0473 at 550.471 kb on + strand, within Shewana3_0473 at 550.471 kb on + strand, within Shewana3_0473 at 550.471 kb on + strand, within Shewana3_0473 at 550.471 kb on + strand, within Shewana3_0473 at 550.479 kb on - strand, within Shewana3_0473 at 550.479 kb on - strand, within Shewana3_0473 at 550.479 kb on - strand, within Shewana3_0473 at 550.480 kb on + strand, within Shewana3_0473 at 550.489 kb on - strand, within Shewana3_0473 at 550.515 kb on + strand, within Shewana3_0473 at 550.536 kb on + strand, within Shewana3_0473 at 550.544 kb on - strand, within Shewana3_0473 at 550.554 kb on - strand, within Shewana3_0473 at 550.597 kb on + strand at 550.597 kb on + strand at 550.605 kb on - strand at 550.623 kb on + strand at 550.806 kb on - strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.811 kb on + strand at 550.819 kb on - strand at 550.819 kb on - strand at 550.819 kb on - strand at 550.819 kb on - strand at 550.826 kb on + strand at 550.826 kb on + strand at 550.847 kb on - strand at 550.976 kb on - strand at 550.976 kb on - strand at 551.044 kb on + strand at 551.049 kb on + strand at 551.049 kb on + strand at 551.057 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 547,888 - +1.7 547,927 + -1.5 548,042 - Shewana3_0471 0.16 -0.7 548,069 + Shewana3_0471 0.23 +1.6 548,091 - Shewana3_0471 0.28 -1.3 548,128 + Shewana3_0471 0.36 -1.9 548,143 - Shewana3_0471 0.40 +0.0 548,206 + Shewana3_0471 0.55 +1.1 548,214 + Shewana3_0471 0.57 +1.1 548,214 - Shewana3_0471 0.57 +0.5 548,216 + Shewana3_0471 0.57 -2.4 548,224 - Shewana3_0471 0.59 +1.4 548,263 - Shewana3_0471 0.68 -0.8 548,307 + Shewana3_0471 0.78 +0.1 548,307 + Shewana3_0471 0.78 -0.2 548,307 + Shewana3_0471 0.78 -0.1 548,307 + Shewana3_0471 0.78 +0.8 548,307 + Shewana3_0471 0.78 +3.6 548,307 + Shewana3_0471 0.78 -2.2 548,356 + -0.5 548,364 - -2.3 550,175 + +0.6 550,288 + Shewana3_0473 0.25 +1.9 550,288 + Shewana3_0473 0.25 +1.0 550,288 + Shewana3_0473 0.25 +0.9 550,296 - Shewana3_0473 0.27 +0.2 550,349 - Shewana3_0473 0.40 -0.3 550,356 - Shewana3_0473 0.41 +0.5 550,391 + Shewana3_0473 0.50 +2.9 550,391 + Shewana3_0473 0.50 -0.6 550,399 - Shewana3_0473 0.52 +1.1 550,425 - Shewana3_0473 0.58 -0.2 550,433 - Shewana3_0473 0.60 -1.3 550,466 - Shewana3_0473 0.68 +1.2 550,470 + Shewana3_0473 0.69 -0.6 550,470 + Shewana3_0473 0.69 +0.4 550,470 + Shewana3_0473 0.69 +0.6 550,470 + Shewana3_0473 0.69 +0.3 550,471 + Shewana3_0473 0.69 -1.7 550,471 + Shewana3_0473 0.69 -0.7 550,471 + Shewana3_0473 0.69 +0.6 550,471 + Shewana3_0473 0.69 -0.0 550,479 - Shewana3_0473 0.71 +0.9 550,479 - Shewana3_0473 0.71 +0.6 550,479 - Shewana3_0473 0.71 -0.7 550,480 + Shewana3_0473 0.71 -0.6 550,489 - Shewana3_0473 0.73 +0.2 550,515 + Shewana3_0473 0.80 -1.0 550,536 + Shewana3_0473 0.85 +1.1 550,544 - Shewana3_0473 0.87 +0.6 550,554 - Shewana3_0473 0.89 +1.3 550,597 + +0.8 550,597 + -1.7 550,605 - +0.7 550,623 + +1.2 550,806 - +0.0 550,811 + -0.2 550,811 + -0.5 550,811 + -0.6 550,811 + -1.7 550,811 + -0.5 550,811 + +0.1 550,811 + -1.2 550,811 + +0.0 550,811 + -1.3 550,811 + +0.6 550,819 - +0.9 550,819 - -1.1 550,819 - -0.6 550,819 - +0.7 550,826 + -0.9 550,826 + +0.2 550,847 - -0.4 550,976 - -1.2 550,976 - -2.2 551,044 + +0.4 551,049 + +1.7 551,049 + -1.1 551,057 - -1.0
Or see this region's nucleotide sequence