Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0380 and Shewana3_0381 overlap by 4 nucleotides Shewana3_0381 and Shewana3_0382 are separated by 88 nucleotides
Shewana3_0380: Shewana3_0380 - HlyD family type I secretion membrane fusion protein (RefSeq), at 421,769 to 423,151
_0380
Shewana3_0381: Shewana3_0381 - ABC transporter related (RefSeq), at 423,148 to 425,325
_0381
Shewana3_0382: Shewana3_0382 - putative outer membrane adhesin like proteiin (RefSeq), at 425,414 to 442,933
_0382
Position (kb) 423
424
425
426 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 422.302 kb on - strand, within Shewana3_0380 at 422.360 kb on + strand, within Shewana3_0380 at 422.368 kb on - strand, within Shewana3_0380 at 422.385 kb on - strand, within Shewana3_0380 at 422.400 kb on - strand, within Shewana3_0380 at 422.495 kb on - strand, within Shewana3_0380 at 422.629 kb on - strand, within Shewana3_0380 at 422.985 kb on + strand, within Shewana3_0380 at 423.066 kb on - strand at 423.298 kb on + strand at 423.299 kb on + strand at 423.299 kb on + strand at 423.307 kb on - strand at 423.428 kb on - strand, within Shewana3_0381 at 423.485 kb on - strand, within Shewana3_0381 at 423.485 kb on - strand, within Shewana3_0381 at 423.615 kb on - strand, within Shewana3_0381 at 423.663 kb on + strand, within Shewana3_0381 at 423.677 kb on - strand, within Shewana3_0381 at 423.760 kb on - strand, within Shewana3_0381 at 423.788 kb on - strand, within Shewana3_0381 at 423.933 kb on - strand, within Shewana3_0381 at 423.943 kb on - strand, within Shewana3_0381 at 423.953 kb on - strand, within Shewana3_0381 at 424.246 kb on - strand, within Shewana3_0381 at 424.338 kb on + strand, within Shewana3_0381 at 424.456 kb on + strand, within Shewana3_0381 at 424.482 kb on - strand, within Shewana3_0381 at 424.482 kb on - strand, within Shewana3_0381 at 424.810 kb on + strand, within Shewana3_0381 at 424.822 kb on + strand, within Shewana3_0381 at 425.154 kb on - strand at 425.156 kb on - strand at 425.245 kb on + strand at 425.251 kb on - strand at 425.333 kb on - strand at 425.333 kb on - strand at 425.442 kb on + strand at 425.510 kb on + strand at 425.589 kb on - strand at 425.656 kb on - strand at 425.798 kb on + strand at 425.803 kb on - strand at 425.872 kb on - strand at 425.899 kb on - strand at 426.063 kb on + strand at 426.083 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 422,302 - Shewana3_0380 0.39 +0.6 422,360 + Shewana3_0380 0.43 +0.7 422,368 - Shewana3_0380 0.43 +1.0 422,385 - Shewana3_0380 0.45 +0.8 422,400 - Shewana3_0380 0.46 -1.4 422,495 - Shewana3_0380 0.52 +0.7 422,629 - Shewana3_0380 0.62 -0.3 422,985 + Shewana3_0380 0.88 +1.6 423,066 - +1.2 423,298 + +0.3 423,299 + +0.6 423,299 + +1.0 423,307 - -0.9 423,428 - Shewana3_0381 0.13 +1.9 423,485 - Shewana3_0381 0.15 +1.6 423,485 - Shewana3_0381 0.15 +0.6 423,615 - Shewana3_0381 0.21 +1.9 423,663 + Shewana3_0381 0.24 +0.6 423,677 - Shewana3_0381 0.24 -0.8 423,760 - Shewana3_0381 0.28 -0.1 423,788 - Shewana3_0381 0.29 +1.0 423,933 - Shewana3_0381 0.36 +3.4 423,943 - Shewana3_0381 0.37 +0.6 423,953 - Shewana3_0381 0.37 +0.2 424,246 - Shewana3_0381 0.50 -0.9 424,338 + Shewana3_0381 0.55 +2.1 424,456 + Shewana3_0381 0.60 +1.0 424,482 - Shewana3_0381 0.61 +0.3 424,482 - Shewana3_0381 0.61 +0.6 424,810 + Shewana3_0381 0.76 +0.1 424,822 + Shewana3_0381 0.77 +1.9 425,154 - +0.6 425,156 - +0.6 425,245 + +0.1 425,251 - +2.0 425,333 - +1.9 425,333 - +0.7 425,442 + +1.1 425,510 + -2.1 425,589 - +0.1 425,656 - +0.8 425,798 + -1.0 425,803 - +0.2 425,872 - +0.9 425,899 - +1.3 426,063 + +0.2 426,083 + +0.7
Or see this region's nucleotide sequence