Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0377 and Shewana3_0378 are separated by 18 nucleotides Shewana3_0378 and Shewana3_0379 overlap by 4 nucleotides Shewana3_0379 and Shewana3_0380 are separated by 26 nucleotides
Shewana3_0377: Shewana3_0377 - hypothetical protein (RefSeq), at 418,996 to 419,703
_0377
Shewana3_0378: Shewana3_0378 - OmpA/MotB domain-containing protein (RefSeq), at 419,722 to 420,330
_0378
Shewana3_0379: Shewana3_0379 - TolC family type I secretion outer membrane protein (RefSeq), at 420,327 to 421,742
_0379
Shewana3_0380: Shewana3_0380 - HlyD family type I secretion membrane fusion protein (RefSeq), at 421,769 to 423,151
_0380
Position (kb) 420
421
422 Strain fitness (log2 ratio) -1
0
1
2 at 419.558 kb on - strand, within Shewana3_0377 at 419.560 kb on - strand, within Shewana3_0377 at 419.685 kb on + strand at 419.763 kb on + strand at 419.888 kb on - strand, within Shewana3_0378 at 420.071 kb on + strand, within Shewana3_0378 at 420.154 kb on - strand, within Shewana3_0378 at 420.201 kb on - strand, within Shewana3_0378 at 420.386 kb on + strand at 420.646 kb on + strand, within Shewana3_0379 at 420.692 kb on + strand, within Shewana3_0379 at 421.273 kb on + strand, within Shewana3_0379 at 421.281 kb on - strand, within Shewana3_0379 at 421.302 kb on + strand, within Shewana3_0379 at 421.331 kb on + strand, within Shewana3_0379 at 421.492 kb on + strand, within Shewana3_0379 at 421.579 kb on + strand, within Shewana3_0379 at 421.711 kb on + strand at 421.737 kb on - strand at 421.800 kb on - strand at 421.920 kb on - strand, within Shewana3_0380 at 422.302 kb on - strand, within Shewana3_0380 at 422.360 kb on + strand, within Shewana3_0380 at 422.368 kb on - strand, within Shewana3_0380 at 422.385 kb on - strand, within Shewana3_0380 at 422.400 kb on - strand, within Shewana3_0380 at 422.495 kb on - strand, within Shewana3_0380 at 422.629 kb on - strand, within Shewana3_0380
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 419,558 - Shewana3_0377 0.79 +0.3 419,560 - Shewana3_0377 0.80 +0.6 419,685 + -1.5 419,763 + -0.0 419,888 - Shewana3_0378 0.27 +0.0 420,071 + Shewana3_0378 0.57 +1.5 420,154 - Shewana3_0378 0.71 -0.8 420,201 - Shewana3_0378 0.79 +1.4 420,386 + +1.8 420,646 + Shewana3_0379 0.23 +1.1 420,692 + Shewana3_0379 0.26 +1.0 421,273 + Shewana3_0379 0.67 -0.3 421,281 - Shewana3_0379 0.67 +1.1 421,302 + Shewana3_0379 0.69 +0.4 421,331 + Shewana3_0379 0.71 +0.6 421,492 + Shewana3_0379 0.82 +0.3 421,579 + Shewana3_0379 0.88 +0.6 421,711 + +1.9 421,737 - +1.4 421,800 - -0.2 421,920 - Shewana3_0380 0.11 +1.7 422,302 - Shewana3_0380 0.39 +0.6 422,360 + Shewana3_0380 0.43 +0.7 422,368 - Shewana3_0380 0.43 +1.0 422,385 - Shewana3_0380 0.45 +0.8 422,400 - Shewana3_0380 0.46 -1.4 422,495 - Shewana3_0380 0.52 +0.7 422,629 - Shewana3_0380 0.62 -0.3
Or see this region's nucleotide sequence