Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0280 and Shewana3_0281 are separated by 325 nucleotides Shewana3_0281 and Shewana3_0282 are separated by 46 nucleotides Shewana3_0282 and Shewana3_0283 are separated by 70 nucleotides
Shewana3_0280: Shewana3_0280 - ABC transporter related (RefSeq), at 313,623 to 314,726
_0280
Shewana3_0281: Shewana3_0281 - hypothetical protein (RefSeq), at 315,052 to 315,573
_0281
Shewana3_0282: Shewana3_0282 - two component transcriptional regulator (RefSeq), at 315,620 to 316,297
_0282
Shewana3_0283: Shewana3_0283 - ATPase domain-containing protein (RefSeq), at 316,368 to 317,603
_0283
Position (kb) 315
316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 314.181 kb on + strand, within Shewana3_0280 at 314.372 kb on - strand, within Shewana3_0280 at 314.568 kb on - strand, within Shewana3_0280 at 314.666 kb on + strand at 314.959 kb on + strand at 315.063 kb on - strand at 315.149 kb on + strand, within Shewana3_0281 at 315.377 kb on + strand, within Shewana3_0281 at 315.568 kb on + strand at 315.576 kb on - strand at 315.576 kb on - strand at 315.576 kb on - strand at 315.576 kb on - strand at 315.600 kb on - strand at 315.605 kb on - strand at 315.768 kb on - strand, within Shewana3_0282 at 315.850 kb on - strand, within Shewana3_0282 at 315.925 kb on - strand, within Shewana3_0282 at 315.981 kb on - strand, within Shewana3_0282 at 315.999 kb on + strand, within Shewana3_0282 at 316.035 kb on + strand, within Shewana3_0282 at 316.070 kb on - strand, within Shewana3_0282 at 316.257 kb on - strand at 316.299 kb on - strand at 316.300 kb on - strand at 316.543 kb on - strand, within Shewana3_0283 at 316.560 kb on + strand, within Shewana3_0283 at 316.560 kb on + strand, within Shewana3_0283 at 316.560 kb on + strand, within Shewana3_0283
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 314,181 + Shewana3_0280 0.51 -0.9 314,372 - Shewana3_0280 0.68 -0.1 314,568 - Shewana3_0280 0.86 +2.0 314,666 + -1.1 314,959 + +1.1 315,063 - -0.5 315,149 + Shewana3_0281 0.19 -3.0 315,377 + Shewana3_0281 0.62 -2.4 315,568 + +1.3 315,576 - +0.8 315,576 - +2.2 315,576 - -0.1 315,576 - +0.4 315,600 - +0.6 315,605 - -0.1 315,768 - Shewana3_0282 0.22 -0.7 315,850 - Shewana3_0282 0.34 -0.2 315,925 - Shewana3_0282 0.45 -0.4 315,981 - Shewana3_0282 0.53 -0.6 315,999 + Shewana3_0282 0.56 -0.2 316,035 + Shewana3_0282 0.61 +1.1 316,070 - Shewana3_0282 0.66 -0.1 316,257 - -0.2 316,299 - +1.1 316,300 - +0.4 316,543 - Shewana3_0283 0.14 +0.4 316,560 + Shewana3_0283 0.16 -0.2 316,560 + Shewana3_0283 0.16 +0.0 316,560 + Shewana3_0283 0.16 -0.2
Or see this region's nucleotide sequence