Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0254 and Shewana3_0255 are separated by 50 nucleotides Shewana3_0255 and Shewana3_0256 are separated by 38 nucleotides Shewana3_0256 and Shewana3_0257 are separated by 186 nucleotides Shewana3_0257 and Shewana3_0258 are separated by 213 nucleotides
Shewana3_0254: Shewana3_0254 - protein of unknown function, Spy-related (RefSeq), at 286,327 to 286,818
_0254
Shewana3_0255: Shewana3_0255 - cation diffusion facilitator family transporter (RefSeq), at 286,869 to 287,768
_0255
Shewana3_0256: Shewana3_0256 - hypothetical protein (RefSeq), at 287,807 to 288,217
_0256
Shewana3_0257: Shewana3_0257 - outer membrane protein, putative (RefSeq), at 288,404 to 288,817
_0257
Shewana3_0258: Shewana3_0258 - nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq), at 289,031 to 290,440
_0258
Position (kb) 287
288
289 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 286.812 kb on + strand at 286.850 kb on - strand at 286.947 kb on - strand at 286.967 kb on + strand, within Shewana3_0255 at 287.034 kb on + strand, within Shewana3_0255 at 287.107 kb on - strand, within Shewana3_0255 at 287.486 kb on - strand, within Shewana3_0255 at 287.494 kb on + strand, within Shewana3_0255 at 287.502 kb on - strand, within Shewana3_0255 at 287.589 kb on - strand, within Shewana3_0255 at 287.599 kb on - strand, within Shewana3_0255 at 287.719 kb on - strand at 287.744 kb on + strand at 287.744 kb on + strand at 287.809 kb on + strand at 287.841 kb on - strand at 287.886 kb on + strand, within Shewana3_0256 at 287.921 kb on + strand, within Shewana3_0256 at 287.988 kb on + strand, within Shewana3_0256 at 287.988 kb on + strand, within Shewana3_0256 at 287.988 kb on + strand, within Shewana3_0256 at 287.988 kb on + strand, within Shewana3_0256 at 287.988 kb on + strand, within Shewana3_0256 at 287.988 kb on + strand, within Shewana3_0256 at 287.988 kb on + strand, within Shewana3_0256 at 287.996 kb on - strand, within Shewana3_0256 at 287.996 kb on - strand, within Shewana3_0256 at 287.996 kb on - strand, within Shewana3_0256 at 287.996 kb on - strand, within Shewana3_0256 at 287.996 kb on - strand, within Shewana3_0256 at 287.996 kb on - strand, within Shewana3_0256 at 288.055 kb on - strand, within Shewana3_0256 at 288.093 kb on + strand, within Shewana3_0256 at 288.101 kb on - strand, within Shewana3_0256 at 288.101 kb on - strand, within Shewana3_0256 at 288.102 kb on + strand, within Shewana3_0256 at 288.102 kb on + strand, within Shewana3_0256 at 288.110 kb on - strand, within Shewana3_0256 at 288.138 kb on + strand, within Shewana3_0256 at 288.157 kb on - strand, within Shewana3_0256 at 288.157 kb on - strand, within Shewana3_0256 at 288.384 kb on - strand at 288.389 kb on - strand at 288.460 kb on + strand, within Shewana3_0257 at 288.473 kb on + strand, within Shewana3_0257 at 288.518 kb on + strand, within Shewana3_0257 at 288.519 kb on + strand, within Shewana3_0257 at 288.526 kb on - strand, within Shewana3_0257 at 288.526 kb on - strand, within Shewana3_0257 at 288.528 kb on - strand, within Shewana3_0257 at 288.550 kb on - strand, within Shewana3_0257 at 288.562 kb on - strand, within Shewana3_0257 at 288.706 kb on + strand, within Shewana3_0257 at 288.818 kb on - strand at 288.835 kb on + strand at 289.090 kb on - strand at 289.124 kb on + strand at 289.124 kb on + strand at 289.132 kb on - strand at 289.132 kb on - strand at 289.137 kb on - strand at 289.211 kb on + strand, within Shewana3_0258
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 286,812 + +0.5 286,850 - -0.6 286,947 - -0.2 286,967 + Shewana3_0255 0.11 +0.4 287,034 + Shewana3_0255 0.18 -1.4 287,107 - Shewana3_0255 0.26 +0.2 287,486 - Shewana3_0255 0.69 +0.1 287,494 + Shewana3_0255 0.69 -1.2 287,502 - Shewana3_0255 0.70 +1.4 287,589 - Shewana3_0255 0.80 +0.1 287,599 - Shewana3_0255 0.81 +0.5 287,719 - +0.1 287,744 + -0.6 287,744 + +0.2 287,809 + -0.2 287,841 - +0.1 287,886 + Shewana3_0256 0.19 -0.4 287,921 + Shewana3_0256 0.28 -1.4 287,988 + Shewana3_0256 0.44 +0.3 287,988 + Shewana3_0256 0.44 +0.2 287,988 + Shewana3_0256 0.44 -2.0 287,988 + Shewana3_0256 0.44 +0.7 287,988 + Shewana3_0256 0.44 -2.0 287,988 + Shewana3_0256 0.44 -0.6 287,988 + Shewana3_0256 0.44 -0.1 287,996 - Shewana3_0256 0.46 -0.0 287,996 - Shewana3_0256 0.46 -0.7 287,996 - Shewana3_0256 0.46 +0.6 287,996 - Shewana3_0256 0.46 +0.8 287,996 - Shewana3_0256 0.46 -0.0 287,996 - Shewana3_0256 0.46 -1.5 288,055 - Shewana3_0256 0.60 +1.8 288,093 + Shewana3_0256 0.70 -1.5 288,101 - Shewana3_0256 0.72 -0.3 288,101 - Shewana3_0256 0.72 -0.4 288,102 + Shewana3_0256 0.72 -0.0 288,102 + Shewana3_0256 0.72 -1.2 288,110 - Shewana3_0256 0.74 +0.3 288,138 + Shewana3_0256 0.81 +0.1 288,157 - Shewana3_0256 0.85 -0.0 288,157 - Shewana3_0256 0.85 +0.8 288,384 - -0.1 288,389 - +0.2 288,460 + Shewana3_0257 0.14 -2.6 288,473 + Shewana3_0257 0.17 -1.0 288,518 + Shewana3_0257 0.28 -0.5 288,519 + Shewana3_0257 0.28 -0.8 288,526 - Shewana3_0257 0.29 -1.6 288,526 - Shewana3_0257 0.29 -1.5 288,528 - Shewana3_0257 0.30 -0.1 288,550 - Shewana3_0257 0.35 +0.7 288,562 - Shewana3_0257 0.38 +0.7 288,706 + Shewana3_0257 0.73 -1.2 288,818 - +0.7 288,835 + -0.3 289,090 - -5.2 289,124 + -3.5 289,124 + -2.6 289,132 - -5.7 289,132 - -2.7 289,137 - -4.4 289,211 + Shewana3_0258 0.13 -4.9
Or see this region's nucleotide sequence