Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0129 and Shewana3_0130 are separated by 54 nucleotides Shewana3_0130 and Shewana3_0131 are separated by 11 nucleotides Shewana3_0131 and Shewana3_0132 are separated by 247 nucleotides Shewana3_0132 and Shewana3_0133 are separated by 75 nucleotides
Shewana3_0129: Shewana3_0129 - response regulator receiver protein (RefSeq), at 144,781 to 145,443
_0129
Shewana3_0130: Shewana3_0130 - molybdopterin biosynthesis protein MoeB (RefSeq), at 145,498 to 146,259
_0130
Shewana3_0131: Shewana3_0131 - molybdopterin molybdochelatase (RefSeq), at 146,271 to 147,605
_0131
Shewana3_0132: Shewana3_0132 - Ferritin, Dps family protein (RefSeq), at 147,853 to 148,389
_0132
Shewana3_0133: Shewana3_0133 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 148,465 to 151,698
_0133
Position (kb) 146
147
148 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 145.275 kb on + strand, within Shewana3_0129 at 145.288 kb on - strand, within Shewana3_0129 at 145.348 kb on + strand, within Shewana3_0129 at 145.351 kb on - strand, within Shewana3_0129 at 145.353 kb on + strand, within Shewana3_0129 at 145.353 kb on + strand, within Shewana3_0129 at 145.362 kb on - strand, within Shewana3_0129 at 145.399 kb on + strand at 145.399 kb on + strand at 145.414 kb on - strand at 145.488 kb on - strand at 145.488 kb on - strand at 145.522 kb on + strand at 145.535 kb on - strand at 145.688 kb on - strand, within Shewana3_0130 at 145.793 kb on + strand, within Shewana3_0130 at 145.815 kb on + strand, within Shewana3_0130 at 146.119 kb on + strand, within Shewana3_0130 at 146.127 kb on - strand, within Shewana3_0130 at 146.269 kb on + strand at 146.269 kb on + strand at 146.277 kb on - strand at 146.277 kb on - strand at 146.437 kb on - strand, within Shewana3_0131 at 146.511 kb on - strand, within Shewana3_0131 at 146.519 kb on - strand, within Shewana3_0131 at 146.668 kb on - strand, within Shewana3_0131 at 146.759 kb on - strand, within Shewana3_0131 at 146.772 kb on + strand, within Shewana3_0131 at 146.990 kb on - strand, within Shewana3_0131 at 147.011 kb on - strand, within Shewana3_0131 at 147.106 kb on + strand, within Shewana3_0131 at 147.106 kb on + strand, within Shewana3_0131 at 147.106 kb on + strand, within Shewana3_0131 at 147.106 kb on + strand, within Shewana3_0131 at 147.106 kb on + strand, within Shewana3_0131 at 147.108 kb on - strand, within Shewana3_0131 at 147.108 kb on - strand, within Shewana3_0131 at 147.108 kb on - strand, within Shewana3_0131 at 147.108 kb on - strand, within Shewana3_0131 at 147.114 kb on - strand, within Shewana3_0131 at 147.114 kb on - strand, within Shewana3_0131 at 147.114 kb on - strand, within Shewana3_0131 at 147.114 kb on - strand, within Shewana3_0131 at 147.140 kb on + strand, within Shewana3_0131 at 147.439 kb on + strand, within Shewana3_0131 at 147.439 kb on + strand, within Shewana3_0131 at 147.439 kb on + strand, within Shewana3_0131 at 147.439 kb on + strand, within Shewana3_0131 at 147.528 kb on - strand at 147.581 kb on + strand at 147.592 kb on + strand at 147.602 kb on + strand at 147.661 kb on - strand at 147.949 kb on + strand, within Shewana3_0132 at 148.042 kb on + strand, within Shewana3_0132 at 148.218 kb on + strand, within Shewana3_0132
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 145,275 + Shewana3_0129 0.75 -1.1 145,288 - Shewana3_0129 0.76 +0.6 145,348 + Shewana3_0129 0.86 -0.4 145,351 - Shewana3_0129 0.86 +0.2 145,353 + Shewana3_0129 0.86 -0.4 145,353 + Shewana3_0129 0.86 -0.2 145,362 - Shewana3_0129 0.88 +0.1 145,399 + -0.1 145,399 + +0.7 145,414 - +0.4 145,488 - -0.3 145,488 - +0.2 145,522 + -1.2 145,535 - -1.2 145,688 - Shewana3_0130 0.25 -1.5 145,793 + Shewana3_0130 0.39 -0.6 145,815 + Shewana3_0130 0.42 +1.4 146,119 + Shewana3_0130 0.81 -3.7 146,127 - Shewana3_0130 0.83 -3.2 146,269 + +0.4 146,269 + -1.1 146,277 - +0.3 146,277 - +1.3 146,437 - Shewana3_0131 0.12 +0.9 146,511 - Shewana3_0131 0.18 -0.1 146,519 - Shewana3_0131 0.19 -2.5 146,668 - Shewana3_0131 0.30 -1.1 146,759 - Shewana3_0131 0.37 -1.1 146,772 + Shewana3_0131 0.38 -2.4 146,990 - Shewana3_0131 0.54 -0.4 147,011 - Shewana3_0131 0.55 -0.1 147,106 + Shewana3_0131 0.63 -1.8 147,106 + Shewana3_0131 0.63 -1.0 147,106 + Shewana3_0131 0.63 -3.7 147,106 + Shewana3_0131 0.63 -1.4 147,106 + Shewana3_0131 0.63 -3.9 147,108 - Shewana3_0131 0.63 -1.9 147,108 - Shewana3_0131 0.63 -2.0 147,108 - Shewana3_0131 0.63 +2.2 147,108 - Shewana3_0131 0.63 -1.2 147,114 - Shewana3_0131 0.63 -1.5 147,114 - Shewana3_0131 0.63 -0.4 147,114 - Shewana3_0131 0.63 -1.8 147,114 - Shewana3_0131 0.63 -1.2 147,140 + Shewana3_0131 0.65 -0.7 147,439 + Shewana3_0131 0.87 -0.2 147,439 + Shewana3_0131 0.87 +0.3 147,439 + Shewana3_0131 0.87 -0.7 147,439 + Shewana3_0131 0.87 -0.3 147,528 - -1.1 147,581 + +0.2 147,592 + +0.4 147,602 + +1.1 147,661 - -0.4 147,949 + Shewana3_0132 0.18 -1.2 148,042 + Shewana3_0132 0.35 +1.7 148,218 + Shewana3_0132 0.68 +0.7
Or see this region's nucleotide sequence