Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0127 and Shewana3_0128 are separated by 41 nucleotides Shewana3_0128 and Shewana3_0129 are separated by 25 nucleotides Shewana3_0129 and Shewana3_0130 are separated by 54 nucleotides Shewana3_0130 and Shewana3_0131 are separated by 11 nucleotides
Shewana3_0127: Shewana3_0127 - putative SAM-dependent methyltransferase (RefSeq), at 143,323 to 144,417
_0127
Shewana3_0128: Shewana3_0128 - hypothetical protein (RefSeq), at 144,459 to 144,755
_0128
Shewana3_0129: Shewana3_0129 - response regulator receiver protein (RefSeq), at 144,781 to 145,443
_0129
Shewana3_0130: Shewana3_0130 - molybdopterin biosynthesis protein MoeB (RefSeq), at 145,498 to 146,259
_0130
Shewana3_0131: Shewana3_0131 - molybdopterin molybdochelatase (RefSeq), at 146,271 to 147,605
_0131
Position (kb) 144
145
146 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 143.818 kb on + strand, within Shewana3_0127 at 143.862 kb on + strand, within Shewana3_0127 at 143.887 kb on + strand, within Shewana3_0127 at 143.977 kb on + strand, within Shewana3_0127 at 144.017 kb on - strand, within Shewana3_0127 at 144.107 kb on - strand, within Shewana3_0127 at 144.107 kb on - strand, within Shewana3_0127 at 144.126 kb on - strand, within Shewana3_0127 at 144.200 kb on + strand, within Shewana3_0127 at 144.380 kb on - strand at 144.380 kb on - strand at 144.486 kb on - strand at 144.821 kb on - strand at 144.903 kb on - strand, within Shewana3_0129 at 144.903 kb on - strand, within Shewana3_0129 at 145.275 kb on + strand, within Shewana3_0129 at 145.288 kb on - strand, within Shewana3_0129 at 145.348 kb on + strand, within Shewana3_0129 at 145.351 kb on - strand, within Shewana3_0129 at 145.353 kb on + strand, within Shewana3_0129 at 145.353 kb on + strand, within Shewana3_0129 at 145.362 kb on - strand, within Shewana3_0129 at 145.399 kb on + strand at 145.399 kb on + strand at 145.414 kb on - strand at 145.488 kb on - strand at 145.488 kb on - strand at 145.522 kb on + strand at 145.535 kb on - strand at 145.688 kb on - strand, within Shewana3_0130 at 145.793 kb on + strand, within Shewana3_0130 at 145.815 kb on + strand, within Shewana3_0130 at 146.119 kb on + strand, within Shewana3_0130 at 146.127 kb on - strand, within Shewana3_0130 at 146.269 kb on + strand at 146.269 kb on + strand at 146.277 kb on - strand at 146.277 kb on - strand at 146.437 kb on - strand, within Shewana3_0131
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 143,818 + Shewana3_0127 0.45 -0.9 143,862 + Shewana3_0127 0.49 +0.4 143,887 + Shewana3_0127 0.52 +0.1 143,977 + Shewana3_0127 0.60 +0.9 144,017 - Shewana3_0127 0.63 +0.9 144,107 - Shewana3_0127 0.72 -0.3 144,107 - Shewana3_0127 0.72 -2.4 144,126 - Shewana3_0127 0.73 +0.9 144,200 + Shewana3_0127 0.80 -0.3 144,380 - -0.7 144,380 - -0.8 144,486 - +0.9 144,821 - +0.0 144,903 - Shewana3_0129 0.18 +0.0 144,903 - Shewana3_0129 0.18 -0.2 145,275 + Shewana3_0129 0.75 -1.1 145,288 - Shewana3_0129 0.76 +0.6 145,348 + Shewana3_0129 0.86 -0.4 145,351 - Shewana3_0129 0.86 +0.2 145,353 + Shewana3_0129 0.86 -0.4 145,353 + Shewana3_0129 0.86 -0.2 145,362 - Shewana3_0129 0.88 +0.1 145,399 + -0.1 145,399 + +0.7 145,414 - +0.4 145,488 - -0.3 145,488 - +0.2 145,522 + -1.2 145,535 - -1.2 145,688 - Shewana3_0130 0.25 -1.5 145,793 + Shewana3_0130 0.39 -0.6 145,815 + Shewana3_0130 0.42 +1.4 146,119 + Shewana3_0130 0.81 -3.7 146,127 - Shewana3_0130 0.83 -3.2 146,269 + +0.4 146,269 + -1.1 146,277 - +0.3 146,277 - +1.3 146,437 - Shewana3_0131 0.12 +0.9
Or see this region's nucleotide sequence