Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0029 and Shewana3_0030 are separated by 198 nucleotides Shewana3_0030 and Shewana3_0031 are separated by 46 nucleotides Shewana3_0031 and trkA are separated by 11 nucleotides
Shewana3_0029: Shewana3_0029 - ArsR family transcriptional regulator (RefSeq), at 36,096 to 36,404
_0029
Shewana3_0030: Shewana3_0030 - protoporphyrinogen oxidase (RefSeq), at 36,603 to 37,157
_0030
Shewana3_0031: Shewana3_0031 - TrkH family potassium uptake protein (RefSeq), at 37,204 to 38,646
_0031
Shewana3_0032: trkA - potassium transporter peripheral membrane component (RefSeq), at 38,658 to 40,067
trkA
Position (kb) 37
38
39 Strain fitness (log2 ratio) -1
0
1
2 at 36.593 kb on + strand at 36.691 kb on + strand, within Shewana3_0030 at 36.696 kb on + strand, within Shewana3_0030 at 36.775 kb on + strand, within Shewana3_0030 at 36.884 kb on + strand, within Shewana3_0030 at 37.007 kb on - strand, within Shewana3_0030 at 37.008 kb on + strand, within Shewana3_0030 at 37.114 kb on - strand at 37.122 kb on + strand at 37.228 kb on + strand at 37.236 kb on - strand at 37.347 kb on + strand at 37.461 kb on + strand, within Shewana3_0031 at 37.461 kb on + strand, within Shewana3_0031 at 37.623 kb on - strand, within Shewana3_0031 at 37.739 kb on - strand, within Shewana3_0031 at 37.834 kb on + strand, within Shewana3_0031 at 38.063 kb on + strand, within Shewana3_0031 at 38.162 kb on + strand, within Shewana3_0031 at 38.180 kb on - strand, within Shewana3_0031 at 38.263 kb on + strand, within Shewana3_0031 at 38.314 kb on - strand, within Shewana3_0031 at 38.348 kb on - strand, within Shewana3_0031 at 38.549 kb on + strand at 38.566 kb on + strand at 38.569 kb on - strand at 38.581 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 36,593 + +0.8 36,691 + Shewana3_0030 0.16 -1.2 36,696 + Shewana3_0030 0.17 +0.1 36,775 + Shewana3_0030 0.31 -1.0 36,884 + Shewana3_0030 0.51 +0.7 37,007 - Shewana3_0030 0.73 -0.4 37,008 + Shewana3_0030 0.73 -0.5 37,114 - -0.6 37,122 + +0.7 37,228 + +0.6 37,236 - -0.6 37,347 + +0.2 37,461 + Shewana3_0031 0.18 -0.8 37,461 + Shewana3_0031 0.18 -0.7 37,623 - Shewana3_0031 0.29 -1.3 37,739 - Shewana3_0031 0.37 -1.7 37,834 + Shewana3_0031 0.44 -0.5 38,063 + Shewana3_0031 0.60 -0.4 38,162 + Shewana3_0031 0.66 -0.2 38,180 - Shewana3_0031 0.68 +1.3 38,263 + Shewana3_0031 0.73 +2.5 38,314 - Shewana3_0031 0.77 +0.0 38,348 - Shewana3_0031 0.79 +1.5 38,549 + +0.3 38,566 + +0.2 38,569 - -1.0 38,581 + -1.0
Or see this region's nucleotide sequence