Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4387 and Shewana3_4388 are separated by 8 nucleotides Shewana3_4388 and Shewana3_4389 are separated by 87 nucleotides Shewana3_4389 and Shewana3_4390 are separated by 131 nucleotides
Shewana3_4387: Shewana3_4387 - peptidase M56, BlaR1 (RefSeq), at 274,941 to 275,921
_4387
Shewana3_4388: Shewana3_4388 - transcriptional regulator, TrmB (RefSeq), at 275,930 to 276,307
_4388
Shewana3_4389: Shewana3_4389 - hypothetical protein (RefSeq), at 276,395 to 276,745
_4389
Shewana3_4390: Shewana3_4390 - LysR family transcriptional regulator (RefSeq), at 276,877 to 277,758
_4390
Position (kb) 276
277 Strain fitness (log2 ratio) -2
-1
0
1
2 at 275.404 kb on + strand, within Shewana3_4387 at 275.438 kb on - strand, within Shewana3_4387 at 275.491 kb on + strand, within Shewana3_4387 at 275.497 kb on - strand, within Shewana3_4387 at 275.561 kb on - strand, within Shewana3_4387 at 275.733 kb on + strand, within Shewana3_4387 at 275.733 kb on + strand, within Shewana3_4387 at 275.741 kb on - strand, within Shewana3_4387 at 275.752 kb on + strand, within Shewana3_4387 at 275.833 kb on - strand at 276.043 kb on - strand, within Shewana3_4388 at 276.144 kb on - strand, within Shewana3_4388 at 276.215 kb on - strand, within Shewana3_4388 at 276.332 kb on + strand at 276.429 kb on - strand at 276.701 kb on - strand, within Shewana3_4389 at 276.774 kb on - strand at 277.103 kb on - strand, within Shewana3_4390 at 277.109 kb on + strand, within Shewana3_4390 at 277.272 kb on + strand, within Shewana3_4390 at 277.703 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 275,404 + Shewana3_4387 0.47 +2.1 275,438 - Shewana3_4387 0.51 +1.6 275,491 + Shewana3_4387 0.56 +0.9 275,497 - Shewana3_4387 0.57 +0.2 275,561 - Shewana3_4387 0.63 +1.6 275,733 + Shewana3_4387 0.81 -0.7 275,733 + Shewana3_4387 0.81 -0.9 275,741 - Shewana3_4387 0.82 +0.7 275,752 + Shewana3_4387 0.83 +0.9 275,833 - +0.5 276,043 - Shewana3_4388 0.30 -0.4 276,144 - Shewana3_4388 0.57 -0.2 276,215 - Shewana3_4388 0.75 -0.3 276,332 + -0.5 276,429 - -0.8 276,701 - Shewana3_4389 0.87 -2.6 276,774 - -1.2 277,103 - Shewana3_4390 0.26 +0.1 277,109 + Shewana3_4390 0.26 -1.9 277,272 + Shewana3_4390 0.45 -0.5 277,703 - +0.2
Or see this region's nucleotide sequence