Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4316

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4313 and Shewana3_4314 are separated by 55 nucleotidesShewana3_4314 and Shewana3_4315 are separated by 93 nucleotidesShewana3_4315 and Shewana3_4316 overlap by 4 nucleotidesShewana3_4316 and Shewana3_4317 are separated by 204 nucleotides Shewana3_4313: Shewana3_4313 - mercuric transport protein periplasmic component (RefSeq), at 202,785 to 203,060 _4313 Shewana3_4314: Shewana3_4314 - mercuric transporter MerT (RefSeq), at 203,116 to 203,463 _4314 Shewana3_4315: Shewana3_4315 - MerR family transcriptional regulator (RefSeq), at 203,557 to 203,949 _4315 Shewana3_4316: Shewana3_4316 - phage integrase family protein (RefSeq), at 203,946 to 204,968 _4316 Shewana3_4317: Shewana3_4317 - chromosome segregation ATPases-like protein (RefSeq), at 205,173 to 206,222 _4317 Position (kb) 203 204 205Strain fitness (log2 ratio) -2 -1 0 1at 202.973 kb on - strand, within Shewana3_4313at 203.242 kb on + strand, within Shewana3_4314at 203.250 kb on - strand, within Shewana3_4314at 203.390 kb on + strand, within Shewana3_4314at 203.395 kb on + strand, within Shewana3_4314at 203.398 kb on - strand, within Shewana3_4314at 203.403 kb on - strand, within Shewana3_4314at 203.403 kb on - strand, within Shewana3_4314at 203.944 kb on + strandat 203.962 kb on - strandat 204.144 kb on + strand, within Shewana3_4316at 204.252 kb on - strand, within Shewana3_4316at 204.257 kb on + strand, within Shewana3_4316at 204.328 kb on + strand, within Shewana3_4316at 204.440 kb on - strand, within Shewana3_4316at 204.672 kb on - strand, within Shewana3_4316at 204.677 kb on - strand, within Shewana3_4316at 204.711 kb on + strand, within Shewana3_4316at 204.716 kb on + strand, within Shewana3_4316at 204.716 kb on + strand, within Shewana3_4316at 204.724 kb on + strand, within Shewana3_4316at 204.842 kb on - strand, within Shewana3_4316at 205.237 kb on + strandat 205.269 kb on + strandat 205.277 kb on - strandat 205.379 kb on + strand, within Shewana3_4317at 205.521 kb on + strand, within Shewana3_4317at 205.521 kb on - strand, within Shewana3_4317at 205.569 kb on + strand, within Shewana3_4317at 205.569 kb on + strand, within Shewana3_4317at 205.709 kb on + strand, within Shewana3_4317at 205.828 kb on - strand, within Shewana3_4317at 205.831 kb on + strand, within Shewana3_4317at 205.848 kb on - strand, within Shewana3_4317at 205.906 kb on - strand, within Shewana3_4317at 205.916 kb on - strand, within Shewana3_4317at 205.952 kb on + strand, within Shewana3_4317

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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202,973 - Shewana3_4313 0.68 -0.9
203,242 + Shewana3_4314 0.36 -1.3
203,250 - Shewana3_4314 0.39 +0.0
203,390 + Shewana3_4314 0.79 -1.2
203,395 + Shewana3_4314 0.80 +0.9
203,398 - Shewana3_4314 0.81 -0.7
203,403 - Shewana3_4314 0.82 +0.4
203,403 - Shewana3_4314 0.82 -0.2
203,944 + -0.2
203,962 - -0.4
204,144 + Shewana3_4316 0.19 -1.1
204,252 - Shewana3_4316 0.30 -0.2
204,257 + Shewana3_4316 0.30 -0.6
204,328 + Shewana3_4316 0.37 +1.1
204,440 - Shewana3_4316 0.48 -0.2
204,672 - Shewana3_4316 0.71 -0.7
204,677 - Shewana3_4316 0.71 +0.8
204,711 + Shewana3_4316 0.75 -0.3
204,716 + Shewana3_4316 0.75 -0.1
204,716 + Shewana3_4316 0.75 -1.8
204,724 + Shewana3_4316 0.76 -1.4
204,842 - Shewana3_4316 0.88 -0.1
205,237 + +0.5
205,269 + -0.2
205,277 - -0.3
205,379 + Shewana3_4317 0.20 -0.3
205,521 + Shewana3_4317 0.33 -0.3
205,521 - Shewana3_4317 0.33 +0.1
205,569 + Shewana3_4317 0.38 +1.6
205,569 + Shewana3_4317 0.38 -0.0
205,709 + Shewana3_4317 0.51 -1.6
205,828 - Shewana3_4317 0.62 +1.2
205,831 + Shewana3_4317 0.63 -0.4
205,848 - Shewana3_4317 0.64 +1.7
205,906 - Shewana3_4317 0.70 -0.0
205,916 - Shewana3_4317 0.71 +0.7
205,952 + Shewana3_4317 0.74 -1.1

Or see this region's nucleotide sequence