Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4304

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4303 and Shewana3_4304 are separated by 288 nucleotidesShewana3_4304 and Shewana3_4305 are separated by 842 nucleotides Shewana3_4303: Shewana3_4303 - peptidase M23B (RefSeq), at 190,125 to 190,862 _4303 Shewana3_4304: Shewana3_4304 - hypothetical protein (RefSeq), at 191,151 to 191,600 _4304 Shewana3_4305: Shewana3_4305 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 192,443 to 193,609 _4305 Position (kb) 191 192Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 190.310 kb on + strand, within Shewana3_4303at 190.323 kb on - strand, within Shewana3_4303at 190.421 kb on - strand, within Shewana3_4303at 190.421 kb on - strand, within Shewana3_4303at 190.528 kb on - strand, within Shewana3_4303at 190.765 kb on + strand, within Shewana3_4303at 190.773 kb on - strand, within Shewana3_4303at 191.020 kb on - strandat 191.055 kb on + strandat 191.055 kb on + strandat 191.198 kb on - strand, within Shewana3_4304at 191.198 kb on - strand, within Shewana3_4304at 191.233 kb on - strand, within Shewana3_4304at 191.233 kb on - strand, within Shewana3_4304at 191.474 kb on + strand, within Shewana3_4304at 191.530 kb on + strand, within Shewana3_4304at 191.530 kb on + strand, within Shewana3_4304at 191.530 kb on + strand, within Shewana3_4304at 191.530 kb on + strand, within Shewana3_4304at 191.538 kb on - strand, within Shewana3_4304at 191.538 kb on - strand, within Shewana3_4304at 191.538 kb on - strand, within Shewana3_4304at 191.540 kb on + strand, within Shewana3_4304at 191.549 kb on - strand, within Shewana3_4304at 191.549 kb on - strand, within Shewana3_4304at 191.549 kb on - strand, within Shewana3_4304at 191.559 kb on - strandat 191.603 kb on + strandat 191.619 kb on - strandat 191.761 kb on + strandat 191.872 kb on + strandat 191.880 kb on - strandat 191.965 kb on + strandat 191.983 kb on + strandat 191.989 kb on - strandat 192.197 kb on + strandat 192.197 kb on + strandat 192.205 kb on - strandat 192.205 kb on - strandat 192.205 kb on - strandat 192.205 kb on - strandat 192.205 kb on - strandat 192.205 kb on - strandat 192.205 kb on - strandat 192.205 kb on - strandat 192.205 kb on - strandat 192.212 kb on + strandat 192.212 kb on + strandat 192.215 kb on - strandat 192.215 kb on - strandat 192.220 kb on - strandat 192.220 kb on - strandat 192.222 kb on + strandat 192.223 kb on + strandat 192.230 kb on - strandat 192.230 kb on - strandat 192.231 kb on - strandat 192.231 kb on - strandat 192.237 kb on - strandat 192.237 kb on - strandat 192.268 kb on + strandat 192.273 kb on + strandat 192.307 kb on - strandat 192.316 kb on - strandat 192.320 kb on + strandat 192.320 kb on + strandat 192.323 kb on + strandat 192.326 kb on - strandat 192.328 kb on + strandat 192.328 kb on + strandat 192.328 kb on - strandat 192.328 kb on - strandat 192.328 kb on - strandat 192.328 kb on - strandat 192.330 kb on + strandat 192.330 kb on + strandat 192.330 kb on + strandat 192.330 kb on + strandat 192.330 kb on + strandat 192.330 kb on + strandat 192.330 kb on + strandat 192.336 kb on - strandat 192.336 kb on - strandat 192.336 kb on - strandat 192.338 kb on - strandat 192.338 kb on - strandat 192.346 kb on - strandat 192.400 kb on + strandat 192.405 kb on + strandat 192.405 kb on + strandat 192.405 kb on + strandat 192.418 kb on - strandat 192.418 kb on - strandat 192.423 kb on - strandat 192.428 kb on + strandat 192.499 kb on + strandat 192.499 kb on + strandat 192.500 kb on + strandat 192.500 kb on + strandat 192.514 kb on + strandat 192.514 kb on + strandat 192.519 kb on + strandat 192.522 kb on - strandat 192.522 kb on - strandat 192.522 kb on - strandat 192.527 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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190,310 + Shewana3_4303 0.25 +0.1
190,323 - Shewana3_4303 0.27 -0.1
190,421 - Shewana3_4303 0.40 -0.7
190,421 - Shewana3_4303 0.40 -2.8
190,528 - Shewana3_4303 0.55 -0.5
190,765 + Shewana3_4303 0.87 +1.0
190,773 - Shewana3_4303 0.88 -0.6
191,020 - +0.0
191,055 + -0.3
191,055 + -0.4
191,198 - Shewana3_4304 0.10 +1.2
191,198 - Shewana3_4304 0.10 -0.5
191,233 - Shewana3_4304 0.18 +0.4
191,233 - Shewana3_4304 0.18 -2.0
191,474 + Shewana3_4304 0.72 +0.5
191,530 + Shewana3_4304 0.84 +0.5
191,530 + Shewana3_4304 0.84 +0.6
191,530 + Shewana3_4304 0.84 +0.0
191,530 + Shewana3_4304 0.84 -0.7
191,538 - Shewana3_4304 0.86 +1.5
191,538 - Shewana3_4304 0.86 +0.7
191,538 - Shewana3_4304 0.86 -0.9
191,540 + Shewana3_4304 0.86 +0.4
191,549 - Shewana3_4304 0.88 +0.1
191,549 - Shewana3_4304 0.88 +0.1
191,549 - Shewana3_4304 0.88 +0.4
191,559 - +0.7
191,603 + +0.4
191,619 - +0.6
191,761 + -0.3
191,872 + +0.7
191,880 - -0.6
191,965 + +0.6
191,983 + -0.1
191,989 - -0.2
192,197 + +0.9
192,197 + +0.8
192,205 - +0.9
192,205 - +0.2
192,205 - +0.3
192,205 - -1.7
192,205 - -0.6
192,205 - -0.2
192,205 - -2.1
192,205 - +0.4
192,205 - +1.0
192,212 + -1.8
192,212 + -0.9
192,215 - +0.1
192,215 - -1.1
192,220 - -1.7
192,220 - -1.2
192,222 + -0.3
192,223 + +1.8
192,230 - +0.9
192,230 - -0.2
192,231 - +0.2
192,231 - +0.0
192,237 - -1.5
192,237 - +0.5
192,268 + -0.7
192,273 + +0.7
192,307 - -0.9
192,316 - +0.9
192,320 + -2.3
192,320 + +0.2
192,323 + +0.5
192,326 - +0.3
192,328 + -0.5
192,328 + -0.3
192,328 - +1.3
192,328 - -0.6
192,328 - +0.1
192,328 - +0.2
192,330 + +1.5
192,330 + +1.4
192,330 + -0.6
192,330 + +4.1
192,330 + -0.0
192,330 + +0.1
192,330 + +1.3
192,336 - -1.3
192,336 - +0.9
192,336 - +0.1
192,338 - +0.1
192,338 - -2.4
192,346 - -0.1
192,400 + +1.5
192,405 + +0.8
192,405 + +0.1
192,405 + +0.0
192,418 - -1.1
192,418 - +0.9
192,423 - -2.0
192,428 + +1.1
192,499 + +0.6
192,499 + -1.2
192,500 + -0.4
192,500 + -1.1
192,514 + -0.9
192,514 + -1.8
192,519 + -0.8
192,522 - +0.0
192,522 - -1.2
192,522 - +0.3
192,527 - -0.9

Or see this region's nucleotide sequence