Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4296

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4295 and Shewana3_4296 overlap by 8 nucleotidesShewana3_4296 and Shewana3_4297 are separated by 189 nucleotides Shewana3_4295: Shewana3_4295 - sensor kinase CusS (RefSeq), at 178,084 to 179,559 _4295 Shewana3_4296: Shewana3_4296 - DNA-binding transcriptional activator CusR (RefSeq), at 179,552 to 180,232 _4296 Shewana3_4297: Shewana3_4297 - copper/silver efflux system outer membrane protein CusC (RefSeq), at 180,422 to 181,807 _4297 Position (kb) 179 180 181Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 178.575 kb on + strand, within Shewana3_4295at 178.638 kb on - strand, within Shewana3_4295at 178.649 kb on + strand, within Shewana3_4295at 179.161 kb on - strand, within Shewana3_4295at 179.172 kb on - strand, within Shewana3_4295at 179.241 kb on + strand, within Shewana3_4295at 179.284 kb on - strand, within Shewana3_4295at 179.290 kb on - strand, within Shewana3_4295at 179.373 kb on + strand, within Shewana3_4295at 179.383 kb on + strand, within Shewana3_4295at 179.383 kb on + strand, within Shewana3_4295at 179.391 kb on - strand, within Shewana3_4295at 179.770 kb on + strand, within Shewana3_4296at 179.890 kb on - strand, within Shewana3_4296at 179.911 kb on - strand, within Shewana3_4296at 179.927 kb on + strand, within Shewana3_4296at 179.935 kb on - strand, within Shewana3_4296at 180.020 kb on + strand, within Shewana3_4296at 180.178 kb on - strandat 180.318 kb on - strandat 180.444 kb on + strandat 180.691 kb on - strand, within Shewana3_4297at 180.905 kb on + strand, within Shewana3_4297at 181.009 kb on + strand, within Shewana3_4297at 181.017 kb on - strand, within Shewana3_4297at 181.017 kb on - strand, within Shewana3_4297at 181.062 kb on + strand, within Shewana3_4297at 181.062 kb on + strand, within Shewana3_4297at 181.070 kb on - strand, within Shewana3_4297

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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178,575 + Shewana3_4295 0.33 +0.9
178,638 - Shewana3_4295 0.38 -0.7
178,649 + Shewana3_4295 0.38 -3.1
179,161 - Shewana3_4295 0.73 +0.7
179,172 - Shewana3_4295 0.74 -1.8
179,241 + Shewana3_4295 0.78 +1.3
179,284 - Shewana3_4295 0.81 +0.0
179,290 - Shewana3_4295 0.82 -1.2
179,373 + Shewana3_4295 0.87 -0.8
179,383 + Shewana3_4295 0.88 -1.5
179,383 + Shewana3_4295 0.88 +0.3
179,391 - Shewana3_4295 0.89 +0.7
179,770 + Shewana3_4296 0.32 +1.8
179,890 - Shewana3_4296 0.50 -1.9
179,911 - Shewana3_4296 0.53 +0.8
179,927 + Shewana3_4296 0.55 -0.2
179,935 - Shewana3_4296 0.56 -1.5
180,020 + Shewana3_4296 0.69 +0.6
180,178 - +0.7
180,318 - +1.0
180,444 + -2.1
180,691 - Shewana3_4297 0.19 -0.7
180,905 + Shewana3_4297 0.35 +0.5
181,009 + Shewana3_4297 0.42 +1.6
181,017 - Shewana3_4297 0.43 -1.2
181,017 - Shewana3_4297 0.43 -0.6
181,062 + Shewana3_4297 0.46 +0.4
181,062 + Shewana3_4297 0.46 +0.7
181,070 - Shewana3_4297 0.47 -0.8

Or see this region's nucleotide sequence