Strain Fitness in Shewanella amazonensis SB2B around Sama_3121

Experiment: NAG

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG
3,699,981	+				+0.5
3,699,982	-				-2.4
3,699,982	-				-1.9
3,699,988	-				+0.5
3,699,998	+				+0.7
3,699,998	+				+0.3
3,699,999	-				-0.9
3,699,999	-				-0.4
3,700,011	+				+0.6
3,700,011	+				+1.6
3,700,012	-				+0.0
3,700,019	+				+0.6
3,700,019	+				-1.3
3,700,019	+				-1.1
3,700,020	-				-0.0
3,700,020	-				+0.8
3,700,020	-				-0.9
3,700,020	-				+1.7
3,700,020	-				-1.0
3,700,020	-				+0.4
3,700,020	-				-0.2
3,700,020	-				-0.7
3,700,022	-				+1.0
3,700,023	+				+0.7
3,700,023	+				+0.1
3,700,023	+				-1.4
3,700,023	+				-1.2
3,700,023	+				-0.1
3,700,024	-				+0.5
3,700,024	-				+0.1
3,700,024	-				+1.1
3,700,024	-				+0.5
3,700,024	-				+0.7
3,700,031	-				+0.5
3,700,031	-				+1.0
3,700,033	+				+0.2
3,700,034	-				-0.9
3,700,034	-				+0.4
3,700,034	-				+0.3
3,700,049	+				+0.3
3,700,049	+				+0.9
3,700,050	-				+0.3
3,700,050	-				-0.7
3,700,050	-				+0.9
3,700,050	-				-0.6
3,700,050	-				-1.3
3,700,050	-				+0.9
3,700,050	-				+0.5
3,700,089	+				+1.4
3,700,118	+		Sama_3120	0.12	-0.4
3,700,118	+		Sama_3120	0.12	-0.7
3,700,119	-		Sama_3120	0.12	-0.4
3,700,119	-		Sama_3120	0.12	-0.7
3,700,119	-		Sama_3120	0.12	+2.1
3,700,119	-		Sama_3120	0.12	+0.1
3,700,119	-		Sama_3120	0.12	+1.3
3,700,119	-		Sama_3120	0.12	+0.1
3,700,119	-		Sama_3120	0.12	-0.4
3,700,128	+		Sama_3120	0.14	+1.2
3,700,128	+		Sama_3120	0.14	+0.4
3,700,128	+		Sama_3120	0.14	-0.4
3,700,128	+		Sama_3120	0.14	-0.2
3,700,129	-		Sama_3120	0.14	+0.6
3,700,194	+		Sama_3120	0.26	+0.0
3,700,194	+		Sama_3120	0.26	+0.1
3,700,194	+		Sama_3120	0.26	-1.2
3,700,195	-		Sama_3120	0.26	+0.9
3,700,214	+		Sama_3120	0.29	-0.3
3,700,214	+		Sama_3120	0.29	-1.7
3,700,214	+		Sama_3120	0.29	+0.9
3,700,214	+		Sama_3120	0.29	-0.4
3,700,215	-		Sama_3120	0.30	+0.2
3,700,215	-		Sama_3120	0.30	+0.7
3,700,215	-		Sama_3120	0.30	+2.3
3,700,215	-		Sama_3120	0.30	+1.6
3,700,215	-		Sama_3120	0.30	+0.5
3,700,215	-		Sama_3120	0.30	-0.1
3,700,231	+		Sama_3120	0.33	+1.5
3,700,231	+		Sama_3120	0.33	+1.0
3,700,232	-		Sama_3120	0.33	+0.0
3,700,255	+		Sama_3120	0.37	-1.3
3,700,261	+		Sama_3120	0.38	-0.4
3,700,310	-		Sama_3120	0.47	-0.3
3,700,405	+		Sama_3120	0.65	+0.8
3,700,406	-		Sama_3120	0.65	+0.6
3,700,406	-		Sama_3120	0.65	+0.4
3,700,406	-		Sama_3120	0.65	+0.1
3,700,406	-		Sama_3120	0.65	+0.2
3,700,410	-		Sama_3120	0.66	+1.1
3,700,410	-		Sama_3120	0.66	-1.4
3,700,446	+		Sama_3120	0.72	-0.7
3,700,446	+		Sama_3120	0.72	-0.9
3,700,446	+		Sama_3120	0.72	+0.9
3,700,446	+		Sama_3120	0.72	+0.1
3,700,446	+		Sama_3120	0.72	-0.4
3,700,446	+		Sama_3120	0.72	-1.3
3,700,447	-		Sama_3120	0.73	-1.7
3,700,447	-		Sama_3120	0.73	+1.1
3,700,473	+		Sama_3120	0.77	+0.1
3,700,473	+		Sama_3120	0.77	-0.4
3,700,473	+		Sama_3120	0.77	+0.4
3,700,473	+		Sama_3120	0.77	+0.2
3,700,474	-		Sama_3120	0.78	-0.2
3,700,474	-		Sama_3120	0.78	+0.6
3,700,474	-		Sama_3120	0.78	+0.1
3,700,474	-		Sama_3120	0.78	-0.6
3,700,474	-		Sama_3120	0.78	+1.1
3,700,474	-		Sama_3120	0.78	-1.3
3,700,474	-		Sama_3120	0.78	+0.1
3,700,474	-		Sama_3120	0.78	-1.7
3,700,477	+		Sama_3120	0.78	-0.7
3,700,477	+		Sama_3120	0.78	-0.4
3,700,477	+		Sama_3120	0.78	-0.9
3,700,477	+		Sama_3120	0.78	+1.3
3,700,477	+		Sama_3120	0.78	-0.4
3,700,478	-		Sama_3120	0.78	-0.7
3,700,478	-		Sama_3120	0.78	-0.0
3,700,478	-		Sama_3120	0.78	+0.9
3,700,478	-		Sama_3120	0.78	-0.4
3,700,478	-		Sama_3120	0.78	-0.7
3,700,492	+		Sama_3120	0.81	+1.2
3,700,492	+		Sama_3120	0.81	+1.1
3,700,492	+		Sama_3120	0.81	+1.3
3,700,492	+		Sama_3120	0.81	+0.4
3,700,492	+		Sama_3120	0.81	+0.4
3,700,493	-		Sama_3120	0.81	+0.8
3,700,493	-		Sama_3120	0.81	-0.1
3,700,509	+		Sama_3120	0.84	+0.8
3,700,509	+		Sama_3120	0.84	-0.5
3,700,510	-		Sama_3120	0.84	-0.2
3,700,510	-		Sama_3120	0.84	-1.9
3,700,510	-		Sama_3120	0.84	+1.6
3,700,510	-		Sama_3120	0.84	-0.2
3,700,531	+		Sama_3120	0.88	-0.2
3,700,531	+		Sama_3120	0.88	+1.4
3,700,532	-		Sama_3120	0.88	+1.8
3,700,532	-		Sama_3120	0.88	+1.1
3,700,532	-		Sama_3120	0.88	+0.7
3,700,532	-		Sama_3120	0.88	-1.2
3,700,561	+				-0.7
3,700,561	+				+0.4
3,700,577	+				-1.3
3,700,578	-				+1.3
3,700,578	-				+0.7
3,700,578	-				-0.3
3,700,578	-				+0.8
3,700,590	+				+0.1
3,700,592	+				+1.4
3,700,592	+				-2.0
3,700,592	+				-1.4
3,700,593	-				+1.6
3,700,673	-				+0.7
3,700,708	+				-0.6
3,700,708	+				+0.7
3,700,723	+				+0.6
3,700,723	+				-1.3
3,700,728	+				+0.6
3,700,728	+				+0.0
3,700,729	-				-1.2
3,700,729	-				-0.7
3,700,732	+				-1.4
3,700,733	-				+2.7
3,700,733	-				+0.3
3,700,746	+				-0.6
3,700,747	-				+0.3
3,700,747	-				-0.2
3,700,755	+				-0.2
3,700,755	+				+0.0
3,700,755	+				+0.8
3,700,792	-				-0.4
3,700,828	+				-0.3
3,700,836	+				-0.9
3,700,836	+				-0.6
3,700,850	+				+1.7
3,700,851	-				+0.8
3,700,855	-				-1.0
3,700,855	-				+0.1
3,700,895	-				-0.3
3,700,916	+				-0.2
3,701,003	-				-1.0
3,701,102	+		Sama_3121	0.16	+0.6
3,701,157	-		Sama_3121	0.20	+1.2
3,701,241	-		Sama_3121	0.26	+0.4
3,701,296	-		Sama_3121	0.30	+0.0
3,701,316	-		Sama_3121	0.32	-1.2
3,701,335	+		Sama_3121	0.33	+1.1
3,701,377	+		Sama_3121	0.37	+0.8
3,701,380	-		Sama_3121	0.37	-0.2
3,701,380	-		Sama_3121	0.37	+0.7
3,701,384	+		Sama_3121	0.37	-1.9
3,701,394	-		Sama_3121	0.38	-1.2
3,701,401	-		Sama_3121	0.38	+1.0
3,701,451	+		Sama_3121	0.42	+0.5
3,701,451	+		Sama_3121	0.42	+0.6
3,701,508	+		Sama_3121	0.47	+1.2
3,701,535	+		Sama_3121	0.49	+1.3
3,701,589	-		Sama_3121	0.53	-0.2
3,701,612	+		Sama_3121	0.55	+1.7
3,701,642	-		Sama_3121	0.57	+0.6
3,701,672	+		Sama_3121	0.59	-0.6
3,701,703	-		Sama_3121	0.61	-0.4
3,701,721	+		Sama_3121	0.63	+0.0
3,701,760	+		Sama_3121	0.66	+1.0
3,701,963	-		Sama_3121	0.81	-0.8
3,702,076	-		Sama_3121	0.90	-0.2
3,702,130	+				+0.5
3,702,130	+				+0.4
3,702,186	-				-1.2
3,702,206	-				+1.1
3,702,208	+				+0.7
3,702,223	+				-1.6
3,702,261	-				+0.9
3,702,303	+				-0.1
3,702,304	-				+1.0
3,702,307	+				+0.7
3,702,366	+		Sama_3122	0.14	+0.8
3,702,367	-		Sama_3122	0.14	-0.9
3,702,371	-		Sama_3122	0.15	-0.6
3,702,399	-		Sama_3122	0.19	+0.8
3,702,442	+		Sama_3122	0.25	+1.4
3,702,467	+		Sama_3122	0.29	-0.4
3,702,480	+		Sama_3122	0.31	-2.6
3,702,480	+		Sama_3122	0.31	+0.8
3,702,484	+		Sama_3122	0.31	+1.1
3,702,484	+		Sama_3122	0.31	+0.8
3,702,484	+		Sama_3122	0.31	+0.9
3,702,484	+		Sama_3122	0.31	-1.3
3,702,484	+		Sama_3122	0.31	+0.3
3,702,484	+		Sama_3122	0.31	+0.1
3,702,484	+		Sama_3122	0.31	+0.6
3,702,484	+		Sama_3122	0.31	-1.2
3,702,485	-		Sama_3122	0.31	+0.3
3,702,485	-		Sama_3122	0.31	+0.9
3,702,485	-		Sama_3122	0.31	+0.1
3,702,485	-		Sama_3122	0.31	+0.6
3,702,485	-		Sama_3122	0.31	+1.4
3,702,530	+		Sama_3122	0.38	+1.3
3,702,538	+		Sama_3122	0.39	+0.5
3,702,538	+		Sama_3122	0.39	+0.5
3,702,542	+		Sama_3122	0.40	+0.9
3,702,542	+		Sama_3122	0.40	-0.2
3,702,553	+		Sama_3122	0.41	+1.5
3,702,553	+		Sama_3122	0.41	-1.1
3,702,603	-		Sama_3122	0.48	+0.0
3,702,604	+		Sama_3122	0.48	-0.4
3,702,604	+		Sama_3122	0.48	-0.4
3,702,604	+		Sama_3122	0.48	+1.0
3,702,625	+		Sama_3122	0.51	+0.3
3,702,625	+		Sama_3122	0.51	-1.4
3,702,689	-		Sama_3122	0.61	+1.1
3,702,698	+		Sama_3122	0.62	-0.8
3,702,698	+		Sama_3122	0.62	-0.6
3,702,698	+		Sama_3122	0.62	-0.4
3,702,702	-		Sama_3122	0.62	-1.0
3,702,712	+		Sama_3122	0.64	-0.1
3,702,712	+		Sama_3122	0.64	+0.7
3,702,712	+		Sama_3122	0.64	-0.8
3,702,712	+		Sama_3122	0.64	-0.0
3,702,712	+		Sama_3122	0.64	+0.1
3,702,713	-		Sama_3122	0.64	-1.7
3,702,713	-		Sama_3122	0.64	-1.8
3,702,713	-		Sama_3122	0.64	-2.4
3,702,735	-		Sama_3122	0.67	+0.8
3,702,774	+		Sama_3122	0.73	+0.6
3,702,774	+		Sama_3122	0.73	-0.6
3,702,774	+		Sama_3122	0.73	+2.6
3,702,774	+		Sama_3122	0.73	-0.9
3,702,775	-		Sama_3122	0.73	-1.3
3,702,780	+		Sama_3122	0.74	-1.7
3,702,780	+		Sama_3122	0.74	+2.1
3,702,780	+		Sama_3122	0.74	+1.7
3,702,780	+		Sama_3122	0.74	+0.1
3,702,781	-		Sama_3122	0.74	+0.7
3,702,781	-		Sama_3122	0.74	-1.2
3,702,781	-		Sama_3122	0.74	+2.0
3,702,781	-		Sama_3122	0.74	+0.8
3,702,798	+		Sama_3122	0.76	+0.6
3,702,798	+		Sama_3122	0.76	+1.1
3,702,810	+		Sama_3122	0.78	-0.2
3,702,843	+		Sama_3122	0.83	+0.5
3,702,856	+		Sama_3122	0.85	+0.8
3,702,856	+		Sama_3122	0.85	+0.8
3,702,856	+		Sama_3122	0.85	-0.5
3,702,856	+		Sama_3122	0.85	+1.2
3,702,857	-		Sama_3122	0.85	+0.3
3,702,902	+				+0.6
3,702,902	+				+0.1
3,702,903	-				-0.4
3,702,903	-				+1.8
3,702,917	+				+0.0
3,702,917	+				-0.4
3,702,918	-				+0.5
3,702,918	-				+0.4
3,702,922	+				-0.4
3,702,923	-				+0.7
3,702,940	+				-0.4
3,702,985	-				-0.7
3,702,999	+				-0.2
3,702,999	+				+0.4
3,702,999	+				+0.0
3,702,999	+				+1.1
3,702,999	+				+0.7
3,702,999	+				+0.8
3,703,016	+				+0.1
3,703,094	+				+0.9
3,703,119	-				-2.0
3,703,187	-				+0.4