Experiment: NAG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1423 and Sama_1424 overlap by 7 nucleotides Sama_1424 and sdhA are separated by 1 nucleotides sdhA and sdhB are separated by 12 nucleotides sdhB and sucA are separated by 192 nucleotides
Sama_1423: Sama_1423 - succinate dehydrogenase, cytochrome b556 subunit (RefSeq), at 1,733,105 to 1,733,500
_1423
Sama_1424: Sama_1424 - succinate dehydrogenase, cytochrome b subunit (RefSeq), at 1,733,494 to 1,733,841
_1424
Sama_1425: sdhA - succinate dehydrogenase flavoprotein subunit (RefSeq), at 1,733,843 to 1,735,609
sdhA
Sama_1426: sdhB - succinate dehydrogenase iron-sulfur subunit (RefSeq), at 1,735,622 to 1,736,329
sdhB
Sama_1427: sucA - 2-oxoglutarate dehydrogenase E1 component (RefSeq), at 1,736,522 to 1,739,344
sucA
Position (kb)
1733
1734
1735
1736 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1732.850 kb on - strand at 1732.878 kb on + strand at 1732.879 kb on - strand at 1732.879 kb on - strand at 1732.879 kb on - strand at 1732.879 kb on - strand at 1732.879 kb on - strand at 1732.879 kb on - strand at 1732.884 kb on + strand at 1732.885 kb on - strand at 1732.959 kb on + strand at 1733.012 kb on + strand at 1733.088 kb on + strand at 1735.607 kb on + strand at 1735.607 kb on + strand at 1735.607 kb on + strand at 1736.346 kb on + strand at 1736.346 kb on + strand at 1736.355 kb on + strand at 1736.355 kb on + strand at 1736.355 kb on + strand at 1736.355 kb on + strand at 1736.361 kb on + strand at 1736.363 kb on + strand at 1736.466 kb on + strand at 1736.473 kb on + strand at 1736.473 kb on + strand at 1736.473 kb on + strand at 1736.499 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG remove 1,732,850 - +0.0 1,732,878 + +1.5 1,732,879 - +0.4 1,732,879 - +0.6 1,732,879 - +0.7 1,732,879 - +1.1 1,732,879 - -0.7 1,732,879 - +1.5 1,732,884 + +1.4 1,732,885 - +0.1 1,732,959 + -0.4 1,733,012 + -0.9 1,733,088 + -1.9 1,735,607 + -0.1 1,735,607 + -1.7 1,735,607 + +1.6 1,736,346 + +1.4 1,736,346 + +0.8 1,736,355 + +0.3 1,736,355 + +0.6 1,736,355 + +0.3 1,736,355 + +1.0 1,736,361 + +0.6 1,736,363 + +1.9 1,736,466 + +1.1 1,736,473 + +0.7 1,736,473 + +1.7 1,736,473 + +1.8 1,736,499 + +1.2
Or see this region's nucleotide sequence