Strain Fitness in Shewanella amazonensis SB2B around Sama_1139

Experiment: NAG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1138 and rpsB are separated by 264 nucleotidesrpsB and tsf are separated by 127 nucleotides Sama_1138: Sama_1138 - methionine aminopeptidase (RefSeq), at 1,388,187 to 1,388,987 _1138 Sama_1139: rpsB - 30S ribosomal protein S2 (RefSeq), at 1,389,252 to 1,390,028 rpsB Sama_1140: tsf - elongation factor Ts (RefSeq), at 1,390,156 to 1,391,007 tsf Position (kb) 1389 1390 1391Strain fitness (log2 ratio) -3 -2 -1 0 1at 1389.006 kb on - strandat 1389.006 kb on - strandat 1389.006 kb on - strandat 1389.006 kb on - strandat 1389.006 kb on - strandat 1389.006 kb on - strandat 1389.009 kb on - strandat 1389.009 kb on - strandat 1389.009 kb on - strandat 1389.009 kb on - strandat 1389.040 kb on - strandat 1389.040 kb on - strandat 1391.005 kb on + strandat 1391.019 kb on + strandat 1391.019 kb on + strandat 1391.019 kb on + strandat 1391.019 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG
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1,389,006 - +0.4
1,389,006 - -0.0
1,389,006 - +0.1
1,389,006 - +1.0
1,389,006 - +0.6
1,389,006 - -0.8
1,389,009 - -0.5
1,389,009 - +0.1
1,389,009 - +1.6
1,389,009 - -1.0
1,389,040 - +0.9
1,389,040 - +0.4
1,391,005 + -2.5
1,391,019 + -0.8
1,391,019 + -3.2
1,391,019 + +0.1
1,391,019 + -0.5

Or see this region's nucleotide sequence