Strain Fitness in Shewanella amazonensis SB2B around Sama_1084

Experiment: NAG

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG
1,310,289	+		Sama_1083	0.11	-0.3
1,310,290	-		Sama_1083	0.11	-0.3
1,310,290	-		Sama_1083	0.11	-0.5
1,310,293	+		Sama_1083	0.12	+0.2
1,310,293	+		Sama_1083	0.12	+0.4
1,310,294	-		Sama_1083	0.12	-0.4
1,310,294	-		Sama_1083	0.12	+0.9
1,310,294	-		Sama_1083	0.12	+0.4
1,310,303	-		Sama_1083	0.13	+1.3
1,310,303	-		Sama_1083	0.13	+1.6
1,310,366	+		Sama_1083	0.20	+0.2
1,310,405	+		Sama_1083	0.25	+0.9
1,310,423	+		Sama_1083	0.27	-0.5
1,310,424	-		Sama_1083	0.27	+0.5
1,310,424	-		Sama_1083	0.27	+0.3
1,310,439	-		Sama_1083	0.28	+0.6
1,310,439	-		Sama_1083	0.28	+0.1
1,310,458	-		Sama_1083	0.31	-0.1
1,310,579	+		Sama_1083	0.44	-0.7
1,310,587	+		Sama_1083	0.45	+1.3
1,310,614	-		Sama_1083	0.48	+0.9
1,310,614	-		Sama_1083	0.48	-0.1
1,310,642	+		Sama_1083	0.52	+1.0
1,310,668	+		Sama_1083	0.55	+1.1
1,310,668	+		Sama_1083	0.55	-0.1
1,310,668	+		Sama_1083	0.55	+1.3
1,310,669	-		Sama_1083	0.55	+0.0
1,310,722	+		Sama_1083	0.61	+1.0
1,310,722	+		Sama_1083	0.61	-1.3
1,310,722	+		Sama_1083	0.61	+0.6
1,310,722	+		Sama_1083	0.61	+0.8
1,310,723	-		Sama_1083	0.61	+0.0
1,310,723	-		Sama_1083	0.61	+2.3
1,310,723	-		Sama_1083	0.61	+1.4
1,310,777	+		Sama_1083	0.67	-0.4
1,310,777	+		Sama_1083	0.67	+1.3
1,310,778	-		Sama_1083	0.67	+0.3
1,310,778	-		Sama_1083	0.67	+0.4
1,310,778	-		Sama_1083	0.67	-0.1
1,310,778	-		Sama_1083	0.67	+0.2
1,310,824	-		Sama_1083	0.73	+0.3
1,310,909	-		Sama_1083	0.82	-0.1
1,310,958	-		Sama_1083	0.88	+1.6
1,310,958	-		Sama_1083	0.88	+1.1
1,311,043	+				-0.4
1,311,043	+				+0.7
1,311,044	-				+1.1
1,311,064	+				+0.9
1,311,064	+				+1.1
1,311,065	-				-0.1
1,311,065	-				+0.3
1,311,100	-				-1.6
1,311,100	-				-1.3
1,311,107	+				-0.5
1,311,107	+				-0.1
1,311,107	+				+1.2
1,311,107	+				+0.3
1,311,108	-				+1.4
1,311,108	-				-1.7
1,311,108	-				-0.0
1,311,108	-				-0.5
1,311,108	-				-1.4
1,311,108	-				-1.1
1,311,113	+				+0.6
1,311,113	+				+0.1
1,311,113	+				+1.3
1,311,113	+				-0.6
1,311,113	+				+0.1
1,311,113	+				+0.3
1,311,114	-				-1.1
1,311,114	-				-1.6
1,311,114	-				-0.7
1,311,114	-				+0.6
1,311,114	-				-1.7
1,311,140	+				+0.0
1,311,140	+				-1.5
1,311,141	-				-0.7
1,311,163	-				-1.2
1,311,215	-				+0.2
1,311,282	+				+1.2
1,311,282	+				+0.6
1,311,283	-				-0.4
1,311,295	-				-0.2
1,311,297	+				+0.5
1,311,298	-				-0.6
1,311,396	+				+0.0
1,311,396	+				+1.2
1,311,396	+				-1.1
1,311,396	+				-1.3
1,311,396	+				+0.2
1,311,397	-				+0.1
1,311,397	-				-0.5
1,311,436	+		Sama_1084	0.12	+1.4
1,311,465	+		Sama_1084	0.14	+1.3
1,311,500	-		Sama_1084	0.16	+0.2
1,311,500	-		Sama_1084	0.16	-0.7
1,311,500	-		Sama_1084	0.16	-0.1
1,311,500	-		Sama_1084	0.16	+0.2
1,311,541	+		Sama_1084	0.18	-2.6
1,311,541	+		Sama_1084	0.18	+1.0
1,311,566	+		Sama_1084	0.20	-0.1
1,311,566	+		Sama_1084	0.20	+1.2
1,311,566	+		Sama_1084	0.20	+2.9
1,311,615	-		Sama_1084	0.23	+0.2
1,311,618	-		Sama_1084	0.23	+2.2
1,311,626	+		Sama_1084	0.23	+0.9
1,311,626	+		Sama_1084	0.23	-0.5
1,311,626	+		Sama_1084	0.23	-1.0
1,311,627	-		Sama_1084	0.23	+0.4
1,311,627	-		Sama_1084	0.23	+0.2
1,311,632	+		Sama_1084	0.24	-1.1
1,311,644	+		Sama_1084	0.24	+0.4
1,311,644	+		Sama_1084	0.24	+2.0
1,311,645	-		Sama_1084	0.24	+1.6
1,311,668	+		Sama_1084	0.26	+0.7
1,311,680	+		Sama_1084	0.26	+0.6
1,311,710	+		Sama_1084	0.28	+0.4
1,311,765	+		Sama_1084	0.31	-0.6
1,311,766	-		Sama_1084	0.32	-0.2
1,311,827	+		Sama_1084	0.35	+0.4
1,311,827	+		Sama_1084	0.35	-0.6
1,311,842	+		Sama_1084	0.36	+0.1
1,311,843	-		Sama_1084	0.36	-0.6
1,311,872	+		Sama_1084	0.38	-0.8
1,311,875	+		Sama_1084	0.38	-0.6
1,311,876	-		Sama_1084	0.38	+0.7
1,311,876	-		Sama_1084	0.38	+0.5
1,311,884	+		Sama_1084	0.39	-0.1
1,311,884	+		Sama_1084	0.39	+0.3
1,311,884	+		Sama_1084	0.39	+1.1
1,311,884	+		Sama_1084	0.39	+0.9
1,311,885	-		Sama_1084	0.39	-0.1
1,311,896	+		Sama_1084	0.39	-0.1
1,311,897	-		Sama_1084	0.39	-0.1
1,311,897	-		Sama_1084	0.39	-0.1
1,311,897	-		Sama_1084	0.39	+1.8
1,311,897	-		Sama_1084	0.39	-1.3
1,311,917	-		Sama_1084	0.40	-0.4
1,311,955	+		Sama_1084	0.43	+1.0
1,311,956	-		Sama_1084	0.43	-1.1
1,312,011	-		Sama_1084	0.46	-0.3
1,312,059	+		Sama_1084	0.49	+0.6
1,312,084	+		Sama_1084	0.50	-0.2
1,312,084	+		Sama_1084	0.50	+0.1
1,312,085	-		Sama_1084	0.50	+0.2
1,312,085	-		Sama_1084	0.50	+1.0
1,312,121	+		Sama_1084	0.53	+0.3
1,312,133	-		Sama_1084	0.53	-1.0
1,312,174	-		Sama_1084	0.56	+0.0
1,312,237	+		Sama_1084	0.59	+0.9
1,312,237	+		Sama_1084	0.59	+1.7
1,312,238	-		Sama_1084	0.60	+1.0
1,312,252	-		Sama_1084	0.60	-0.9
1,312,298	-		Sama_1084	0.63	+0.1
1,312,300	+		Sama_1084	0.63	-2.3
1,312,307	+		Sama_1084	0.64	+2.9
1,312,380	+		Sama_1084	0.68	+0.9
1,312,380	+		Sama_1084	0.68	-0.0
1,312,380	+		Sama_1084	0.68	+1.3
1,312,380	+		Sama_1084	0.68	-0.1
1,312,402	+		Sama_1084	0.69	+1.7
1,312,402	+		Sama_1084	0.69	+0.0
1,312,403	-		Sama_1084	0.69	+1.4
1,312,409	+		Sama_1084	0.70	+0.7
1,312,409	+		Sama_1084	0.70	+0.1
1,312,409	+		Sama_1084	0.70	+1.3
1,312,410	-		Sama_1084	0.70	-0.1
1,312,410	-		Sama_1084	0.70	+0.6
1,312,410	-		Sama_1084	0.70	+0.3
1,312,474	+		Sama_1084	0.73	+1.3
1,312,474	+		Sama_1084	0.73	+1.0
1,312,475	-		Sama_1084	0.74	+0.4
1,312,478	+		Sama_1084	0.74	+0.4
1,312,478	+		Sama_1084	0.74	+0.3
1,312,478	+		Sama_1084	0.74	+0.6
1,312,479	-		Sama_1084	0.74	-1.0
1,312,479	-		Sama_1084	0.74	-0.5
1,312,494	-		Sama_1084	0.75	-0.7
1,312,570	+		Sama_1084	0.79	+0.4
1,312,570	+		Sama_1084	0.79	+0.6
1,312,639	+		Sama_1084	0.83	-1.6
1,312,639	+		Sama_1084	0.83	+0.9
1,312,639	+		Sama_1084	0.83	+0.2
1,312,639	+		Sama_1084	0.83	+0.5
1,312,639	+		Sama_1084	0.83	-0.1
1,312,639	+		Sama_1084	0.83	-1.7
1,312,719	+		Sama_1084	0.88	+0.5
1,312,719	+		Sama_1084	0.88	+0.0
1,312,720	-		Sama_1084	0.88	-0.6
1,312,749	+		Sama_1084	0.90	+0.0
1,312,861	+				+0.5
1,312,861	+				+0.4
1,312,861	+				+0.4
1,312,861	+				+0.1
1,312,861	+				-0.0
1,312,861	+				-0.8
1,312,861	+				+0.6
1,312,862	-				-0.1
1,312,862	-				+0.1
1,312,862	-				-0.3
1,312,862	-				+0.1
1,312,862	-				-0.2
1,312,862	-				+0.1
1,312,865	+				-0.0
1,312,865	+				-0.4
1,312,866	-				+1.9
1,312,968	-				+0.6
1,312,968	-				+0.9
1,312,997	+				-0.5
1,313,028	-				-0.1
1,313,038	+				-1.7
1,313,060	+				+0.6
1,313,060	+				+0.9
1,313,060	+				-0.1
1,313,061	-				-0.8
1,313,193	+		Sama_1085	0.14	+0.3
1,313,193	+		Sama_1085	0.14	+1.7
1,313,194	-		Sama_1085	0.14	+1.1
1,313,194	-		Sama_1085	0.14	+1.2
1,313,194	-		Sama_1085	0.14	-0.2
1,313,221	-		Sama_1085	0.31	+0.3
1,313,243	-		Sama_1085	0.44	+1.6
1,313,243	-		Sama_1085	0.44	+0.2
1,313,261	-		Sama_1085	0.56	+1.4
1,313,319	+				+0.4
1,313,319	+				+0.5
1,313,380	+				-0.0
1,313,402	-				+0.9
1,313,416	-				+0.7
1,313,460	-				-0.1
1,313,460	-				-0.7
1,313,460	-				-0.7
1,313,478	+				+0.9
1,313,479	-				-1.6
1,313,566	+				-1.7
1,313,566	+				+0.5
1,313,725	-		Sama_1086	0.14	+0.4
1,313,804	-		Sama_1086	0.20	-0.8
1,313,858	-		Sama_1086	0.24	-0.9
1,313,895	+		Sama_1086	0.26	+0.1
1,313,895	+		Sama_1086	0.26	-1.1
1,313,896	-		Sama_1086	0.26	+0.4
1,313,896	-		Sama_1086	0.26	+0.2
1,313,896	-		Sama_1086	0.26	-0.4