Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2704 and Shew_2705 are separated by 41 nucleotides Shew_2705 and Shew_2706 are separated by 4 nucleotides Shew_2706 and Shew_2707 are separated by 1 nucleotides Shew_2707 and Shew_2708 are separated by 108 nucleotides
Shew_2704: Shew_2704 - Na(+)-translocating NADH-quinone reductase subunit F (RefSeq), at 3,200,581 to 3,201,798
_2704
Shew_2705: Shew_2705 - Na(+)-translocating NADH-quinone reductase subunit E (RefSeq), at 3,201,840 to 3,202,448
_2705
Shew_2706: Shew_2706 - Na(+)-translocating NADH-quinone reductase subunit D (RefSeq), at 3,202,453 to 3,203,076
_2706
Shew_2707: Shew_2707 - Na(+)-translocating NADH-quinone reductase subunit C (RefSeq), at 3,203,078 to 3,203,848
_2707
Shew_2708: Shew_2708 - Na(+)-translocating NADH-quinone reductase subunit B (RefSeq), at 3,203,957 to 3,205,171
_2708
Position (kb) 3202
3203
3204 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3201.639 kb on - strand, within Shew_2704 at 3201.759 kb on + strand at 3201.990 kb on + strand, within Shew_2705 at 3202.114 kb on + strand, within Shew_2705 at 3202.199 kb on + strand, within Shew_2705 at 3202.234 kb on + strand, within Shew_2705 at 3202.612 kb on - strand, within Shew_2706 at 3202.639 kb on - strand, within Shew_2706 at 3202.801 kb on - strand, within Shew_2706 at 3202.980 kb on + strand, within Shew_2706 at 3203.047 kb on + strand at 3203.076 kb on + strand at 3203.221 kb on - strand, within Shew_2707 at 3203.254 kb on - strand, within Shew_2707 at 3203.285 kb on - strand, within Shew_2707 at 3203.285 kb on - strand, within Shew_2707 at 3203.285 kb on - strand, within Shew_2707 at 3203.486 kb on + strand, within Shew_2707 at 3203.523 kb on + strand, within Shew_2707 at 3203.795 kb on + strand at 3204.032 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 3,201,639 - Shew_2704 0.87 -0.9 3,201,759 + +1.1 3,201,990 + Shew_2705 0.25 +0.4 3,202,114 + Shew_2705 0.45 -0.4 3,202,199 + Shew_2705 0.59 -1.4 3,202,234 + Shew_2705 0.65 -1.3 3,202,612 - Shew_2706 0.25 +3.3 3,202,639 - Shew_2706 0.30 -3.7 3,202,801 - Shew_2706 0.56 +0.3 3,202,980 + Shew_2706 0.84 +0.5 3,203,047 + -1.2 3,203,076 + -0.0 3,203,221 - Shew_2707 0.19 +0.1 3,203,254 - Shew_2707 0.23 +0.7 3,203,285 - Shew_2707 0.27 -0.3 3,203,285 - Shew_2707 0.27 -0.5 3,203,285 - Shew_2707 0.27 -0.2 3,203,486 + Shew_2707 0.53 -1.1 3,203,523 + Shew_2707 0.58 +1.0 3,203,795 + +1.9 3,204,032 - +0.4
Or see this region's nucleotide sequence