Strain Fitness in Shewanella loihica PV-4 around Shew_2420

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
2,839,131	+		Shew_2418	0.82	+0.8
2,839,258	+				+0.4
2,839,528	-		Shew_2419	0.28	+0.3
2,839,567	+		Shew_2419	0.36	+0.6
2,839,717	-		Shew_2419	0.68	+0.2
2,839,717	-		Shew_2419	0.68	-0.4
2,839,717	-		Shew_2419	0.68	-0.5
2,839,717	-		Shew_2419	0.68	-0.4
2,839,753	-		Shew_2419	0.75	+0.1
2,839,863	-				+1.1
2,839,935	-				+0.7
2,840,087	+				+0.6
2,840,087	+				-1.4
2,840,095	-				-1.0
2,840,095	-				-0.4
2,840,095	-				-1.5
2,840,562	+		Shew_2420	0.17	-1.3
2,840,619	-		Shew_2420	0.19	-1.5
2,840,698	-		Shew_2420	0.22	-1.5
2,841,053	+		Shew_2420	0.35	-1.3
2,841,254	+		Shew_2420	0.42	-3.2
2,841,281	-		Shew_2420	0.43	-1.5
2,841,506	-		Shew_2420	0.51	-1.6
2,841,537	+		Shew_2420	0.52	-1.4
2,841,545	-		Shew_2420	0.52	-1.0
2,841,898	-		Shew_2420	0.65	-1.1
2,841,898	-		Shew_2420	0.65	-2.3
2,841,939	-		Shew_2420	0.66	+0.6
2,842,034	+		Shew_2420	0.70	-1.4
2,842,071	-		Shew_2420	0.71	-0.2
2,842,136	-		Shew_2420	0.74	-1.1
2,842,406	-		Shew_2420	0.83	-1.3
2,842,530	-		Shew_2420	0.88	-1.6
2,842,655	-				-1.1
2,842,843	-				-0.9
2,842,857	+				-1.4
2,842,947	+				+0.1
2,842,955	-				+0.6
2,843,040	-				+1.4
2,843,052	+				+2.2
2,843,060	-				-1.8
2,843,113	+				-2.9
2,843,189	-				-0.3
2,843,264	+				+0.8
2,843,266	+				+0.2
2,843,278	+				+0.7
2,843,291	-				+1.0
2,843,309	+				+1.0
2,843,309	+				+0.8
2,843,319	+				+0.2
2,843,319	+				-0.2
2,843,327	-				-1.2
2,843,477	+				-0.4
2,843,487	+				+4.7
2,843,501	+				+0.5
2,843,501	+				+4.7
2,843,501	+				+4.2
2,843,516	-				-1.4
2,843,517	+				+4.4
2,843,517	+				+2.6
2,843,525	-				+4.7
2,843,551	+				+5.4
2,843,554	-				+5.8
2,843,587	-				+5.4
2,843,589	+				+4.2
2,843,606	+				+3.8
2,843,608	+				-1.0
2,843,609	-				+3.6
2,843,610	+				+3.3
2,843,610	+				+4.8
2,843,614	-				+2.5
2,843,614	-				+4.4
2,843,616	-				+4.8
2,843,617	+				+3.6
2,843,618	-				+4.8
2,843,618	-				+3.4
2,843,618	-				+3.8
2,843,618	-				-0.4
2,843,619	-				+4.8
2,843,631	+				+4.9
2,843,668	+				+4.5
2,843,676	-				+4.5
2,843,715	+				+4.5
2,843,715	+				+4.4
2,843,715	+				+5.3
2,843,715	+				+3.4
2,843,715	+				+4.1
2,843,716	+				+5.6
2,843,716	+				+5.0
2,843,723	-				+5.2
2,843,723	-				+4.8
2,843,723	-				+3.8
2,843,723	-				+5.0
2,843,724	-				+4.7
2,843,724	-				+4.2
2,843,725	-				+4.4
2,843,737	+				+4.7
2,843,747	-				+4.3
2,843,754	-				+5.1
2,843,761	-				+8.5
2,843,764	-				+5.5
2,843,783	+				+3.8
2,843,783	+				+5.0
2,843,784	-				+4.6
2,843,784	-				+5.3
2,843,791	-				+4.7
2,843,793	+				+4.1
2,843,793	+				+4.7
2,843,793	+				+1.9
2,843,793	+				+3.9
2,843,793	+				+4.7
2,843,793	+				+4.2
2,843,793	+				+3.3
2,843,793	+				+4.9
2,843,793	+				+3.7
2,843,793	+				+4.4
2,843,793	+				+4.6
2,843,793	+				+4.4
2,843,793	+				+3.4
2,843,793	+				+3.8
2,843,793	+				+4.3
2,843,793	+				+5.8
2,843,793	+				+4.0
2,843,793	+				+6.2
2,843,793	+				+3.6
2,843,793	+				+3.1
2,843,793	+				+4.5
2,843,793	+				+3.9
2,843,793	+				+3.5
2,843,793	+				+4.4
2,843,793	+				+5.5
2,843,793	+				+5.2
2,843,793	+				+3.5
2,843,793	+				+3.0
2,843,793	+				+3.7
2,843,793	+				+3.8
2,843,793	+				+4.4
2,843,793	+				+4.6
2,843,793	+				+8.4
2,843,793	+				+4.7
2,843,793	+				+7.8
2,843,793	+				+4.2
2,843,793	+				+4.6
2,843,793	+				+5.0
2,843,793	+				+4.2
2,843,793	+				+3.7
2,843,793	+				+0.4
2,843,793	+				+5.0
2,843,793	+				+3.7
2,843,793	+				+5.0
2,843,793	+				+4.3
2,843,793	+				+5.6
2,843,799	+				+4.4
2,843,799	+				+3.4
2,843,799	+				+4.5
2,843,799	+				+4.0
2,843,799	+				+4.5
2,843,799	+				+4.4
2,843,799	+				+3.0
2,843,799	+				+3.5
2,843,799	+				+4.1
2,843,799	+				+4.7
2,843,799	+				+3.3
2,843,801	-				+3.9
2,843,801	-				+4.5
2,843,801	-				+4.2
2,843,801	-				+3.2
2,843,801	-				+4.5
2,843,801	-				+3.8
2,843,801	-				+5.0
2,843,801	-				+4.3
2,843,801	-				+4.8
2,843,801	-				+4.2
2,843,801	-				+5.0
2,843,801	-				+5.5
2,843,801	-				+5.1
2,843,801	-				+4.3
2,843,801	-				+4.2
2,843,801	-				+4.7
2,843,801	-				+3.6
2,843,801	-				+4.2
2,843,801	-				+1.7
2,843,801	-				+5.8
2,843,801	-				+4.7
2,843,801	-				+4.2
2,843,801	-				-2.4
2,843,801	-				+4.5
2,843,801	-				+2.6
2,843,801	-				+4.9
2,843,801	-				+4.7
2,843,801	-				+4.7
2,843,801	-				+3.3
2,843,801	-				+4.5
2,843,801	-				+4.4
2,843,801	-				+4.1
2,843,801	-				+5.5
2,843,801	-				+5.7
2,843,801	-				+5.8
2,843,801	-				+5.4
2,843,801	-				+4.0
2,843,801	-				+4.6
2,843,801	-				+4.3
2,843,801	-				+2.3
2,843,801	-				-2.0
2,843,801	-				+5.5
2,843,801	-				+5.6
2,843,801	-				+7.1
2,843,801	-				+4.7
2,843,801	-				+5.4
2,843,801	-				+4.2
2,843,801	-				+3.0
2,843,801	-				+6.1
2,843,807	-				+3.1
2,843,807	-				+5.4
2,843,807	-				+2.9
2,843,807	-				+0.7
2,843,807	-				+4.6
2,843,807	-				+5.8
2,843,807	-				+4.6
2,843,807	-				+2.9
2,843,807	-				+4.4