Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2397 and Shew_2398 are separated by 63 nucleotides Shew_2398 and folX are separated by 75 nucleotides folX and Shew_2400 are separated by 96 nucleotides
Shew_2397: Shew_2397 - hypothetical protein (RefSeq), at 2,811,517 to 2,812,434
_2397
Shew_2398: Shew_2398 - hypothetical protein (RefSeq), at 2,812,498 to 2,813,667
_2398
Shew_2399: folX - D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase (RefSeq), at 2,813,743 to 2,814,108
folX
Shew_2400: Shew_2400 - hypothetical protein (RefSeq), at 2,814,205 to 2,815,134
_2400
Position (kb)
2812
2813
2814 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2811.625 kb on + strand, within Shew_2397 at 2812.165 kb on + strand, within Shew_2397 at 2812.218 kb on - strand, within Shew_2397 at 2812.568 kb on + strand at 2812.594 kb on - strand at 2812.622 kb on + strand, within Shew_2398 at 2813.175 kb on - strand, within Shew_2398 at 2813.258 kb on + strand, within Shew_2398 at 2813.266 kb on - strand, within Shew_2398
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 2,811,625 + Shew_2397 0.12 -1.5 2,812,165 + Shew_2397 0.71 +0.8 2,812,218 - Shew_2397 0.76 +0.1 2,812,568 + -0.0 2,812,594 - -5.8 2,812,622 + Shew_2398 0.11 +0.3 2,813,175 - Shew_2398 0.58 +0.4 2,813,258 + Shew_2398 0.65 -1.6 2,813,266 - Shew_2398 0.66 +0.8
Or see this region's nucleotide sequence