Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1767 and Shew_1768 are separated by 418 nucleotides Shew_1768 and Shew_1769 are separated by 33 nucleotides Shew_1769 and Shew_1770 overlap by 4 nucleotides
Shew_1767: Shew_1767 - ATP-dependent helicase HrpA (RefSeq), at 2,019,461 to 2,023,348
_1767
Shew_1768: Shew_1768 - periplasmic nitrate reductase NapE (RefSeq), at 2,023,767 to 2,023,925
_1768
Shew_1769: Shew_1769 - NapD family protein (RefSeq), at 2,023,959 to 2,024,222
_1769
Shew_1770: Shew_1770 - nitrate reductase (RefSeq), at 2,024,219 to 2,026,714
_1770
Position (kb)
2023
2024 Strain fitness (log2 ratio)
-2
-1
0
1 at 2022.783 kb on - strand, within Shew_1767 at 2022.838 kb on - strand, within Shew_1767 at 2022.838 kb on - strand, within Shew_1767 at 2022.840 kb on + strand, within Shew_1767 at 2023.763 kb on + strand at 2023.847 kb on - strand, within Shew_1768 at 2023.859 kb on - strand, within Shew_1768 at 2023.928 kb on - strand at 2023.961 kb on - strand at 2024.168 kb on + strand, within Shew_1769 at 2024.322 kb on + strand at 2024.520 kb on + strand, within Shew_1770 at 2024.817 kb on - strand, within Shew_1770
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 2,022,783 - Shew_1767 0.85 +0.2 2,022,838 - Shew_1767 0.87 -0.1 2,022,838 - Shew_1767 0.87 -0.4 2,022,840 + Shew_1767 0.87 -2.0 2,023,763 + +0.1 2,023,847 - Shew_1768 0.50 +1.6 2,023,859 - Shew_1768 0.58 +1.2 2,023,928 - -1.0 2,023,961 - +0.3 2,024,168 + Shew_1769 0.79 -0.1 2,024,322 + -1.6 2,024,520 + Shew_1770 0.12 -0.5 2,024,817 - Shew_1770 0.24 +0.4
Or see this region's nucleotide sequence