Strain Fitness in Shewanella loihica PV-4 around Shew_1715

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1714 and Shew_1715 are separated by 53 nucleotidesShew_1715 and Shew_1716 are separated by 6 nucleotides Shew_1714: Shew_1714 - alpha/beta hydrolase fold (RefSeq), at 1,967,062 to 1,967,934 _1714 Shew_1715: Shew_1715 - peptide synthase (RefSeq), at 1,967,988 to 1,969,679 _1715 Shew_1716: Shew_1716 - 3-beta hydroxysteroid dehydrogenase/isomerase (RefSeq), at 1,969,686 to 1,970,807 _1716 Position (kb) 1967 1968 1969 1970Strain fitness (log2 ratio) -1 0 1at 1967.010 kb on - strandat 1967.150 kb on - strand, within Shew_1714at 1967.536 kb on - strand, within Shew_1714at 1968.970 kb on - strand, within Shew_1715at 1970.054 kb on + strand, within Shew_1716at 1970.346 kb on + strand, within Shew_1716

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,967,010 - -0.6
1,967,150 - Shew_1714 0.10 -0.9
1,967,536 - Shew_1714 0.54 -1.1
1,968,970 - Shew_1715 0.58 +1.5
1,970,054 + Shew_1716 0.33 -1.1
1,970,346 + Shew_1716 0.59 -1.7

Or see this region's nucleotide sequence