Strain Fitness in Shewanella loihica PV-4 around Shew_1704

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
1,957,835	+		Shew_1702	0.76	+1.6
1,957,835	+		Shew_1702	0.76	-1.3
1,957,843	+		Shew_1702	0.79	+0.2
1,957,844	-		Shew_1702	0.79	-2.3
1,957,872	-		Shew_1702	0.88	+1.0
1,957,873	+		Shew_1702	0.89	+0.9
1,957,873	+		Shew_1702	0.89	-0.1
1,957,873	+		Shew_1702	0.89	+2.0
1,957,873	+		Shew_1702	0.89	+1.1
1,957,873	+		Shew_1702	0.89	+0.1
1,957,873	+		Shew_1702	0.89	-0.5
1,957,873	+		Shew_1702	0.89	+0.6
1,957,873	+		Shew_1702	0.89	-0.2
1,957,873	+		Shew_1702	0.89	+0.3
1,957,873	+		Shew_1702	0.89	-1.0
1,957,873	+		Shew_1702	0.89	+0.5
1,957,873	+		Shew_1702	0.89	-1.9
1,957,873	+		Shew_1702	0.89	-1.1
1,957,873	+		Shew_1702	0.89	-0.7
1,957,873	+		Shew_1702	0.89	+0.4
1,957,881	-				+1.9
1,957,881	-				+1.5
1,957,881	-				-2.8
1,957,881	-				+7.4
1,957,881	-				+0.1
1,957,881	-				+0.4
1,957,881	-				+0.5
1,957,881	-				-0.2
1,957,881	-				-0.5
1,957,881	-				+2.1
1,957,881	-				-0.2
1,957,881	-				-0.0
1,957,881	-				-1.3
1,957,881	-				+1.5
1,957,881	-				+1.1
1,957,881	-				-0.5
1,957,881	-				+1.1
1,957,881	-				+0.6
1,957,881	-				-1.5
1,957,881	-				+1.1
1,957,883	+				+1.0
1,957,891	-				-0.5
1,957,891	-				+0.2
1,957,891	-				+1.1
1,957,893	+				+0.1
1,957,896	+				-0.9
1,957,896	+				-0.5
1,957,896	+				+0.9
1,957,896	+				-0.1
1,957,896	+				-0.6
1,957,901	+				-0.0
1,957,901	+				-0.5
1,957,901	+				-0.1
1,957,901	+				-1.3
1,957,901	-				-0.2
1,957,901	+				-1.0
1,957,901	-				-0.7
1,957,901	+				+0.2
1,957,901	+				-0.4
1,957,901	+				+0.9
1,957,901	+				-0.1
1,957,904	-				+2.5
1,957,904	-				+1.9
1,957,904	-				+0.5
1,957,904	-				+2.1
1,957,909	-				-0.8
1,957,909	-				+3.0
1,957,909	-				+0.9
1,957,909	-				+0.4
1,957,909	-				-0.5
1,957,909	-				+0.4
1,957,909	-				-1.3
1,957,909	-				+1.9
1,957,946	+				-0.8
1,957,994	+				-1.5
1,958,002	-				+1.3
1,958,005	+		Shew_1703	0.10	+0.4
1,958,010	+		Shew_1703	0.11	-0.2
1,958,011	+		Shew_1703	0.12	+1.3
1,958,018	+		Shew_1703	0.13	-0.6
1,958,018	+		Shew_1703	0.13	-1.3
1,958,018	+		Shew_1703	0.13	-0.2
1,958,019	-		Shew_1703	0.13	+0.1
1,958,019	-		Shew_1703	0.13	+3.3
1,958,019	-		Shew_1703	0.13	-1.4
1,958,019	-		Shew_1703	0.13	-0.9
1,958,023	+		Shew_1703	0.14	+0.9
1,958,024	-		Shew_1703	0.14	-1.0
1,958,024	-		Shew_1703	0.14	-0.0
1,958,024	+		Shew_1703	0.14	-0.5
1,958,024	-		Shew_1703	0.14	+1.1
1,958,024	+		Shew_1703	0.14	-0.2
1,958,029	+		Shew_1703	0.15	+0.6
1,958,034	-		Shew_1703	0.16	+0.1
1,958,037	-		Shew_1703	0.16	+1.5
1,958,039	+		Shew_1703	0.17	+1.6
1,958,039	+		Shew_1703	0.17	+0.7
1,958,039	+		Shew_1703	0.17	+2.6
1,958,047	-		Shew_1703	0.18	-0.2
1,958,047	-		Shew_1703	0.18	+2.6
1,958,047	-		Shew_1703	0.18	+0.9
1,958,070	+		Shew_1703	0.23	-1.5
1,958,070	+		Shew_1703	0.23	-1.3
1,958,070	+		Shew_1703	0.23	-0.6
1,958,078	-		Shew_1703	0.24	+0.3
1,958,078	-		Shew_1703	0.24	+0.7
1,958,078	-		Shew_1703	0.24	+1.1
1,958,078	-		Shew_1703	0.24	+0.6
1,958,078	-		Shew_1703	0.24	+2.1
1,958,078	-		Shew_1703	0.24	+0.1
1,958,078	-		Shew_1703	0.24	+1.4
1,958,078	-		Shew_1703	0.24	+0.2
1,958,078	-		Shew_1703	0.24	+0.6
1,958,078	-		Shew_1703	0.24	-0.4
1,958,078	-		Shew_1703	0.24	+0.7
1,958,078	-		Shew_1703	0.24	-0.0
1,958,086	+		Shew_1703	0.26	-2.5
1,958,094	-		Shew_1703	0.27	+0.3
1,958,190	+		Shew_1703	0.45	+1.7
1,958,190	+		Shew_1703	0.45	-0.6
1,958,198	-		Shew_1703	0.47	-0.7
1,958,235	+		Shew_1703	0.54	-0.2
1,958,236	+		Shew_1703	0.54	+1.6
1,958,237	+		Shew_1703	0.54	-1.0
1,958,237	+		Shew_1703	0.54	+1.4
1,958,246	-		Shew_1703	0.56	-2.3
1,958,253	+		Shew_1703	0.57	+1.0
1,958,257	+		Shew_1703	0.58	+0.1
1,958,265	-		Shew_1703	0.60	+0.7
1,958,271	-		Shew_1703	0.61	+0.5
1,958,299	+		Shew_1703	0.66	+0.5
1,958,299	+		Shew_1703	0.66	+0.7
1,958,305	+		Shew_1703	0.67	-1.9
1,958,305	+		Shew_1703	0.67	+0.8
1,958,307	-		Shew_1703	0.68	-0.2
1,958,313	-		Shew_1703	0.69	-0.9
1,958,313	-		Shew_1703	0.69	+0.7
1,958,313	-		Shew_1703	0.69	-0.4
1,958,313	-		Shew_1703	0.69	-0.3
1,958,351	+		Shew_1703	0.76	-0.9
1,958,351	+		Shew_1703	0.76	-1.5
1,958,359	-		Shew_1703	0.77	-0.8
1,958,385	-		Shew_1703	0.82	-0.8
1,958,385	-		Shew_1703	0.82	-0.5
1,958,389	+		Shew_1703	0.83	-0.1
1,958,397	-		Shew_1703	0.85	+1.4
1,958,458	-				+1.1
1,958,497	+				+0.1
1,958,497	+				-0.0
1,958,497	+				-1.5
1,958,497	+				-0.2
1,958,546	+				-1.8
1,958,546	+				+0.8
1,958,546	+				-0.5
1,958,546	+				-0.3
1,958,554	-				+1.1
1,958,554	-				-0.4
1,958,554	-				-0.0
1,958,581	-				+1.3
1,958,581	-				-1.3
1,958,622	+				-0.9
1,958,622	+				+0.4
1,958,622	+				-1.3
1,958,622	+				-1.4
1,958,622	+				+0.5
1,958,624	+				-0.5
1,958,637	-				+1.7
1,958,649	-				-0.3
1,958,824	+				+1.2
1,958,824	+				-2.3
1,958,858	+				+0.5
1,958,901	+		Shew_1704	0.17	+0.2
1,958,901	+		Shew_1704	0.17	-0.2
1,958,906	+		Shew_1704	0.18	+0.5
1,958,906	+		Shew_1704	0.18	+1.2
1,958,914	-		Shew_1704	0.20	+0.1
1,958,914	-		Shew_1704	0.20	-0.9
1,958,914	-		Shew_1704	0.20	-0.4
1,959,082	-		Shew_1704	0.56	+2.1
1,959,097	-		Shew_1704	0.59	+0.5
1,959,147	+		Shew_1704	0.70	-0.4
1,959,148	-		Shew_1704	0.70	+0.3
1,959,463	+		Shew_1705	0.45	-0.2
1,959,560	+		Shew_1705	0.72	-3.5
1,960,036	+		Shew_1706	0.71	-0.0
1,960,183	+				+0.2