Strain Fitness in Shewanella loihica PV-4 around Shew_1650

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1649 and gltA are separated by 748 nucleotidesgltA and Shew_1651 are separated by 412 nucleotidesShew_1651 and Shew_1652 overlap by 7 nucleotides Shew_1649: Shew_1649 - RND family efflux transporter MFP subunit (RefSeq), at 1,895,318 to 1,896,382 _1649 Shew_1650: gltA - type II citrate synthase (RefSeq), at 1,897,131 to 1,898,417 gltA Shew_1651: Shew_1651 - succinate dehydrogenase, cytochrome b subunit (RefSeq), at 1,898,830 to 1,899,225 _1651 Shew_1652: Shew_1652 - putative succinate dehydrogenase, hydrophobic subunit (RefSeq), at 1,899,219 to 1,899,566 _1652 Position (kb) 1897 1898 1899Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1896.630 kb on - strandat 1896.672 kb on + strandat 1896.672 kb on + strandat 1896.948 kb on + strandat 1897.177 kb on - strandat 1897.182 kb on - strandat 1898.413 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,896,630 - -1.5
1,896,672 + -0.3
1,896,672 + +0.2
1,896,948 + -0.2
1,897,177 - -5.4
1,897,182 - -1.2
1,898,413 + -1.5

Or see this region's nucleotide sequence