Strain Fitness in Shewanella loihica PV-4 around Shew_1602

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1601 and Shew_1602 are separated by 46 nucleotidesShew_1602 and Shew_1603 are separated by 10 nucleotidesShew_1603 and Shew_1604 are separated by 160 nucleotides Shew_1601: Shew_1601 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 1,833,497 to 1,834,456 _1601 Shew_1602: Shew_1602 - malonyl CoA-acyl carrier protein transacylase (RefSeq), at 1,834,503 to 1,835,429 _1602 Shew_1603: Shew_1603 - 3-oxoacyl-(acyl-carrier-protein) reductase (RefSeq), at 1,835,440 to 1,836,186 _1603 Shew_1604: Shew_1604 - acyl carrier protein (RefSeq), at 1,836,347 to 1,836,580 _1604 Position (kb) 1834 1835 1836Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1833.931 kb on + strand, within Shew_1601at 1834.680 kb on + strand, within Shew_1602at 1834.958 kb on + strand, within Shew_1602at 1835.161 kb on + strand, within Shew_1602

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
1,833,931 + Shew_1601 0.45 -4.4
1,834,680 + Shew_1602 0.19 +1.0
1,834,958 + Shew_1602 0.49 +2.6
1,835,161 + Shew_1602 0.71 +2.9

Or see this region's nucleotide sequence