Strain Fitness in Shewanella loihica PV-4 around Shew_1378

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfliP and Shew_1377 are separated by 8 nucleotidesShew_1377 and fliR are separated by 42 nucleotidesfliR and flhB overlap by 1 nucleotides Shew_1376: fliP - flagellar biosynthesis protein FliP (RefSeq), at 1,585,148 to 1,585,915 fliP Shew_1377: Shew_1377 - flagellar biosynthetic protein FliQ (RefSeq), at 1,585,924 to 1,586,193 _1377 Shew_1378: fliR - flagellar biosynthesis protein FliR (RefSeq), at 1,586,236 to 1,587,033 fliR Shew_1379: flhB - flagellar biosynthesis protein FlhB (RefSeq), at 1,587,033 to 1,588,166 flhB Position (kb) 1586 1587 1588Strain fitness (log2 ratio) -1 0 1 2 3 4at 1585.373 kb on - strand, within fliPat 1585.514 kb on - strand, within fliPat 1585.542 kb on + strand, within fliPat 1585.603 kb on - strand, within fliPat 1587.009 kb on + strandat 1587.064 kb on - strandat 1587.267 kb on - strand, within flhBat 1587.565 kb on - strand, within flhBat 1587.841 kb on + strand, within flhB

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,585,373 - fliP Shew_1376 0.29 +2.9
1,585,514 - fliP Shew_1376 0.48 +3.2
1,585,542 + fliP Shew_1376 0.51 +4.0
1,585,603 - fliP Shew_1376 0.59 +3.8
1,587,009 + -0.5
1,587,064 - +4.2
1,587,267 - flhB Shew_1379 0.21 +4.1
1,587,565 - flhB Shew_1379 0.47 +2.5
1,587,841 + flhB Shew_1379 0.71 +3.5

Or see this region's nucleotide sequence