Strain Fitness in Shewanella loihica PV-4 around Shew_1104

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
1,272,054	+				+1.1
1,272,238	+		Shew_1103	0.41	+3.6
1,272,284	+		Shew_1103	0.49	-2.9
1,272,284	+		Shew_1103	0.49	-0.5
1,272,284	+		Shew_1103	0.49	+0.1
1,272,284	+		Shew_1103	0.49	+0.2
1,272,284	+		Shew_1103	0.49	-1.0
1,272,284	+		Shew_1103	0.49	+0.6
1,272,284	+		Shew_1103	0.49	+0.0
1,272,292	-		Shew_1103	0.51	+0.8
1,272,292	-		Shew_1103	0.51	+0.7
1,272,292	-		Shew_1103	0.51	+0.9
1,272,292	-		Shew_1103	0.51	+0.6
1,272,292	-		Shew_1103	0.51	+1.0
1,272,292	-		Shew_1103	0.51	-1.8
1,272,292	-		Shew_1103	0.51	+0.8
1,272,292	-		Shew_1103	0.51	-0.1
1,272,453	+		Shew_1103	0.82	-0.7
1,272,758	-		Shew_1104	0.21	+0.9
1,272,762	+		Shew_1104	0.22	+1.8
1,272,823	+		Shew_1104	0.28	-1.4
1,272,828	+		Shew_1104	0.28	-2.0
1,272,828	+		Shew_1104	0.28	+0.1
1,272,828	+		Shew_1104	0.28	+0.6
1,272,838	+		Shew_1104	0.29	+1.2
1,272,857	+		Shew_1104	0.31	+0.2
1,272,857	+		Shew_1104	0.31	+2.1
1,272,865	-		Shew_1104	0.32	-1.4
1,272,942	+		Shew_1104	0.40	+0.7
1,273,086	+		Shew_1104	0.55	-0.6
1,273,093	+		Shew_1104	0.55	+0.1
1,273,101	-		Shew_1104	0.56	+0.6
1,273,103	+		Shew_1104	0.56	+0.5
1,273,103	+		Shew_1104	0.56	-2.6
1,273,103	+		Shew_1104	0.56	+0.4
1,273,103	+		Shew_1104	0.56	+0.7
1,273,103	+		Shew_1104	0.56	-0.5
1,273,103	+		Shew_1104	0.56	+0.1
1,273,103	+		Shew_1104	0.56	+0.5
1,273,103	+		Shew_1104	0.56	-0.1
1,273,103	+		Shew_1104	0.56	-0.0
1,273,103	+		Shew_1104	0.56	-0.8
1,273,103	+		Shew_1104	0.56	+1.5
1,273,103	+		Shew_1104	0.56	+1.7
1,273,103	+		Shew_1104	0.56	-2.0
1,273,111	-		Shew_1104	0.57	+1.4
1,273,111	-		Shew_1104	0.57	+2.1
1,273,111	-		Shew_1104	0.57	+3.2
1,273,111	-		Shew_1104	0.57	+0.4
1,273,111	-		Shew_1104	0.57	+3.4
1,273,111	-		Shew_1104	0.57	+1.5
1,273,111	-		Shew_1104	0.57	+0.6
1,273,111	-		Shew_1104	0.57	-0.3
1,273,111	-		Shew_1104	0.57	-1.9
1,273,111	-		Shew_1104	0.57	+1.1
1,273,111	-		Shew_1104	0.57	-1.9
1,273,111	-		Shew_1104	0.57	-0.9
1,273,111	-		Shew_1104	0.57	+0.2
1,273,121	-		Shew_1104	0.58	+0.7
1,273,128	-		Shew_1104	0.59	+3.3
1,273,130	-		Shew_1104	0.59	+1.6
1,273,188	+		Shew_1104	0.65	+1.2
1,273,298	-		Shew_1104	0.76	+2.3
1,273,298	-		Shew_1104	0.76	-2.9
1,273,298	-		Shew_1104	0.76	+0.4
1,273,319	-		Shew_1104	0.78	+2.6
1,273,319	-		Shew_1104	0.78	-0.7
1,273,354	+		Shew_1104	0.82	+0.8
1,273,354	+		Shew_1104	0.82	+0.5
1,273,389	+		Shew_1104	0.85	-0.4
1,273,394	+		Shew_1104	0.86	-0.3
1,273,394	+		Shew_1104	0.86	-0.1
1,273,402	-		Shew_1104	0.87	+1.1
1,273,440	+				+1.4
1,273,446	+				-2.0
1,273,483	+				-0.5
1,273,505	-				+1.7
1,273,520	+				+1.1
1,273,551	+				+0.3
1,273,606	-		Shew_1105	0.15	+2.3
1,273,614	-		Shew_1105	0.17	-0.6
1,273,621	+		Shew_1105	0.19	-0.5
1,273,625	+		Shew_1105	0.20	-1.1
1,273,625	+		Shew_1105	0.20	-0.6
1,273,625	+		Shew_1105	0.20	+0.7
1,273,626	-		Shew_1105	0.20	+1.6
1,273,626	-		Shew_1105	0.20	+2.0
1,273,628	-		Shew_1105	0.20	+1.0
1,273,633	-		Shew_1105	0.21	-0.1
1,273,633	-		Shew_1105	0.21	+0.2
1,273,636	-		Shew_1105	0.22	+1.8
1,273,641	+		Shew_1105	0.23	+0.6
1,273,648	+		Shew_1105	0.25	+0.4
1,273,682	-		Shew_1105	0.33	+2.9
1,273,776	-		Shew_1105	0.54	+2.2
1,273,776	-		Shew_1105	0.54	+0.9
1,273,787	+		Shew_1105	0.57	-0.2
1,273,792	+		Shew_1105	0.58	+1.0
1,273,800	+		Shew_1105	0.60	+1.7
1,273,800	+		Shew_1105	0.60	-1.1
1,273,800	+		Shew_1105	0.60	+0.3
1,273,800	+		Shew_1105	0.60	-0.3
1,273,808	-		Shew_1105	0.62	+0.4
1,273,808	-		Shew_1105	0.62	+0.1
1,273,808	-		Shew_1105	0.62	-0.2
1,273,847	+		Shew_1105	0.71	+1.0
1,273,861	-		Shew_1105	0.74	+0.6
1,273,866	-		Shew_1105	0.75	+0.4
1,273,877	+		Shew_1105	0.77	-0.3
1,273,885	-		Shew_1105	0.79	+1.2
1,273,885	-		Shew_1105	0.79	-0.4
1,273,933	-				+1.5
1,273,933	-				+0.6
1,274,004	+				+0.2
1,274,006	+				-1.2
1,274,012	-				-1.4
1,274,012	-				-1.2
1,274,014	-				+0.9
1,274,035	+				+0.1
1,274,035	+				-0.1
1,274,035	+				-0.6
1,274,049	+				+1.1
1,274,057	-				-0.9
1,274,057	-				-0.2
1,274,059	+				+0.9
1,274,139	-				-0.6
1,274,139	+				-0.2
1,274,147	-				+0.4
1,274,159	+				+0.0
1,274,159	+				+2.4
1,274,159	+				-2.6
1,274,159	+				+0.5
1,274,159	+				+1.0
1,274,160	+				+0.5
1,274,167	+				+0.7
1,274,167	+				-0.1
1,274,167	+				-0.1
1,274,169	+				-3.1
1,274,175	-				-1.6
1,274,175	-				-1.1
1,274,208	-				+1.4
1,274,288	+				+0.5
1,274,288	+				+3.1
1,274,305	+				+0.4
1,274,310	+				+0.2
1,274,310	+				+1.9
1,274,310	-				-1.4
1,274,310	+				-1.5
1,274,310	+				-0.3
1,274,313	-				+0.8
1,274,320	+				+1.0
1,274,320	+				+0.5
1,274,320	+				-0.2
1,274,328	-				+1.3
1,274,338	+		Shew_1106	0.10	+1.0
1,274,338	+		Shew_1106	0.10	-3.1
1,274,338	+		Shew_1106	0.10	+0.9
1,274,338	+		Shew_1106	0.10	+2.6
1,274,361	+		Shew_1106	0.11	+1.8
1,274,383	+		Shew_1106	0.11	+0.6
1,274,425	+		Shew_1106	0.13	+1.5
1,274,473	+		Shew_1106	0.14	+2.1
1,274,473	+		Shew_1106	0.14	+2.4
1,274,480	-		Shew_1106	0.14	-1.6