Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1015 and Shew_1016 are separated by 75 nucleotides Shew_1016 and Shew_1017 overlap by 8 nucleotides Shew_1017 and Shew_1018 are separated by 128 nucleotides
Shew_1015: Shew_1015 - Cl- channel, voltage-gated family protein (RefSeq), at 1,174,427 to 1,176,136
_1015
Shew_1016: Shew_1016 - hypothetical protein (RefSeq), at 1,176,212 to 1,177,129
_1016
Shew_1017: Shew_1017 - iron-sulfur cluster insertion protein ErpA (RefSeq), at 1,177,122 to 1,177,472
_1017
Shew_1018: Shew_1018 - hypothetical protein (RefSeq), at 1,177,601 to 1,178,074
_1018
Position (kb) 1176
1177
1178 Strain fitness (log2 ratio) -2
-1
0
1 at 1175.302 kb on + strand, within Shew_1015 at 1175.416 kb on + strand, within Shew_1015 at 1176.013 kb on + strand at 1176.829 kb on + strand, within Shew_1016 at 1176.854 kb on - strand, within Shew_1016 at 1176.895 kb on - strand, within Shew_1016 at 1176.983 kb on - strand, within Shew_1016 at 1177.713 kb on - strand, within Shew_1018 at 1177.744 kb on + strand, within Shew_1018 at 1178.060 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 1,175,302 + Shew_1015 0.51 +0.5 1,175,416 + Shew_1015 0.58 -2.7 1,176,013 + +0.4 1,176,829 + Shew_1016 0.67 -1.1 1,176,854 - Shew_1016 0.70 -0.5 1,176,895 - Shew_1016 0.74 +0.3 1,176,983 - Shew_1016 0.84 -1.0 1,177,713 - Shew_1018 0.24 +0.5 1,177,744 + Shew_1018 0.30 -0.3 1,178,060 - -0.6
Or see this region's nucleotide sequence