Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0958 and Shew_0959 are separated by 147 nucleotides Shew_0959 and Shew_0960 are separated by 212 nucleotides Shew_0960 and Shew_0961 are separated by 267 nucleotides Shew_0961 and Shew_0962 are separated by 125 nucleotides
Shew_0958: Shew_0958 - hypothetical protein (RefSeq), at 1,101,533 to 1,102,990
_0958
Shew_0959: Shew_0959 - hypothetical protein (RefSeq), at 1,103,138 to 1,103,614
_0959
Shew_0960: Shew_0960 - hypothetical protein (RefSeq), at 1,103,827 to 1,104,777
_0960
Shew_0961: Shew_0961 - hypothetical protein (RefSeq), at 1,105,045 to 1,105,389
_0961
Shew_0962: Shew_0962 - hypothetical protein (RefSeq), at 1,105,515 to 1,105,685
_0962
Position (kb) 1103
1104
1105 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1102.860 kb on + strand at 1103.251 kb on + strand, within Shew_0959 at 1103.259 kb on - strand, within Shew_0959 at 1103.259 kb on - strand, within Shew_0959 at 1103.530 kb on + strand, within Shew_0959 at 1105.402 kb on + strand at 1105.410 kb on - strand at 1105.654 kb on - strand, within Shew_0962 at 1105.715 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 1,102,860 + -0.2 1,103,251 + Shew_0959 0.24 +2.3 1,103,259 - Shew_0959 0.25 +0.8 1,103,259 - Shew_0959 0.25 -0.2 1,103,530 + Shew_0959 0.82 +0.7 1,105,402 + -3.8 1,105,410 - -1.3 1,105,654 - Shew_0962 0.81 -2.4 1,105,715 - +0.0
Or see this region's nucleotide sequence