Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0830 and Shew_0831 are separated by 40 nucleotides Shew_0831 and Shew_0832 are separated by 358 nucleotides Shew_0832 and Shew_0833 are separated by 262 nucleotides Shew_0833 and Shew_0834 are separated by 82 nucleotides
Shew_0830: Shew_0830 - LrgB family protein (RefSeq), at 952,139 to 952,828
_0830
Shew_0831: Shew_0831 - CBS domain-containing protein (RefSeq), at 952,869 to 953,288
_0831
Shew_0832: Shew_0832 - alkaline phosphatase (RefSeq), at 953,647 to 955,419
_0832
Shew_0833: Shew_0833 - hypoxanthine-guanine phosphoribosyltransferase (RefSeq), at 955,682 to 956,248
_0833
Shew_0834: Shew_0834 - hypothetical protein (RefSeq), at 956,331 to 956,543
_0834
Position (kb) 953
954
955
956 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 952.763 kb on + strand at 952.903 kb on - strand at 952.903 kb on - strand at 953.524 kb on + strand at 953.605 kb on - strand at 953.942 kb on - strand, within Shew_0832 at 954.027 kb on + strand, within Shew_0832 at 954.309 kb on - strand, within Shew_0832 at 954.666 kb on + strand, within Shew_0832 at 955.287 kb on - strand at 955.292 kb on + strand at 955.312 kb on + strand at 955.378 kb on + strand at 955.797 kb on + strand, within Shew_0833 at 956.214 kb on - strand at 956.293 kb on - strand at 956.329 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 952,763 + +0.1 952,903 - -1.3 952,903 - +1.7 953,524 + +0.2 953,605 - +3.5 953,942 - Shew_0832 0.17 +0.8 954,027 + Shew_0832 0.21 -0.4 954,309 - Shew_0832 0.37 +0.4 954,666 + Shew_0832 0.57 +0.4 955,287 - -2.6 955,292 + +0.4 955,312 + +0.0 955,378 + -0.1 955,797 + Shew_0833 0.20 +0.1 956,214 - -2.7 956,293 - +0.2 956,329 + -0.0
Or see this region's nucleotide sequence