Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0820 and Shew_0821 are separated by 156 nucleotides Shew_0821 and Shew_0822 are separated by 66 nucleotides Shew_0822 and Shew_0823 are separated by 246 nucleotides
Shew_0820: Shew_0820 - hypothetical protein (RefSeq), at 943,663 to 944,850
_0820
Shew_0821: Shew_0821 - mitomycin resistance protein (RefSeq), at 945,007 to 945,294
_0821
Shew_0822: Shew_0822 - lysine exporter protein LysE/YggA (RefSeq), at 945,361 to 945,954
_0822
Shew_0823: Shew_0823 - LysR family transcriptional regulator (RefSeq), at 946,201 to 947,106
_0823
Position (kb) 945
946 Strain fitness (log2 ratio) -2
-1
0
1 at 944.183 kb on - strand, within Shew_0820 at 944.701 kb on + strand, within Shew_0820 at 945.195 kb on + strand, within Shew_0821 at 945.535 kb on + strand, within Shew_0822 at 945.758 kb on + strand, within Shew_0822 at 945.888 kb on + strand, within Shew_0822 at 946.073 kb on + strand at 946.086 kb on + strand at 946.093 kb on - strand at 946.225 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 944,183 - Shew_0820 0.44 +0.1 944,701 + Shew_0820 0.87 +0.4 945,195 + Shew_0821 0.65 -2.7 945,535 + Shew_0822 0.29 -0.1 945,758 + Shew_0822 0.67 -0.5 945,888 + Shew_0822 0.89 -0.3 946,073 + +0.1 946,086 + -0.8 946,093 - -0.1 946,225 - +0.6
Or see this region's nucleotide sequence