Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0769 and Shew_0770 are separated by 78 nucleotides Shew_0770 and Shew_0771 are separated by 220 nucleotides
Shew_0769: Shew_0769 - branched-chain amino acid transport system II carrier protein (RefSeq), at 877,699 to 879,030
_0769
Shew_0770: Shew_0770 - tyrosine recombinase XerD (RefSeq), at 879,109 to 880,020
_0770
Shew_0771: Shew_0771 - thiol:disulfide interchange protein DsbC (RefSeq), at 880,241 to 880,966
_0771
Position (kb) 879
880
881 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 878.245 kb on - strand, within Shew_0769 at 878.302 kb on + strand, within Shew_0769 at 878.310 kb on - strand, within Shew_0769 at 878.774 kb on - strand, within Shew_0769 at 878.860 kb on + strand, within Shew_0769 at 878.943 kb on + strand at 879.257 kb on + strand, within Shew_0770 at 879.354 kb on - strand, within Shew_0770 at 879.539 kb on + strand, within Shew_0770 at 879.549 kb on + strand, within Shew_0770 at 879.701 kb on + strand, within Shew_0770 at 879.803 kb on + strand, within Shew_0770 at 879.918 kb on + strand, within Shew_0770 at 879.993 kb on + strand at 880.008 kb on + strand at 880.377 kb on + strand, within Shew_0771 at 880.525 kb on - strand, within Shew_0771 at 880.550 kb on - strand, within Shew_0771 at 880.826 kb on - strand, within Shew_0771 at 880.860 kb on + strand, within Shew_0771 at 880.868 kb on - strand, within Shew_0771 at 880.868 kb on - strand, within Shew_0771
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 878,245 - Shew_0769 0.41 +0.3 878,302 + Shew_0769 0.45 -0.1 878,310 - Shew_0769 0.46 +0.1 878,774 - Shew_0769 0.81 -2.6 878,860 + Shew_0769 0.87 -2.3 878,943 + +0.6 879,257 + Shew_0770 0.16 -2.2 879,354 - Shew_0770 0.27 -3.5 879,539 + Shew_0770 0.47 -4.0 879,549 + Shew_0770 0.48 -2.6 879,701 + Shew_0770 0.65 -2.0 879,803 + Shew_0770 0.76 -3.6 879,918 + Shew_0770 0.89 -2.4 879,993 + -0.1 880,008 + -3.0 880,377 + Shew_0771 0.19 -0.0 880,525 - Shew_0771 0.39 -0.5 880,550 - Shew_0771 0.43 +0.2 880,826 - Shew_0771 0.81 +1.1 880,860 + Shew_0771 0.85 +0.3 880,868 - Shew_0771 0.86 +0.3 880,868 - Shew_0771 0.86 -0.4
Or see this region's nucleotide sequence