Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0702 and Shew_0703 are separated by 183 nucleotides Shew_0703 and Shew_0704 are separated by 186 nucleotides Shew_0704 and Shew_0705 are separated by 304 nucleotides
Shew_0702: Shew_0702 - rhomboid family protein (RefSeq), at 796,784 to 797,866
_0702
Shew_0703: Shew_0703 - response regulator receiver protein (RefSeq), at 798,050 to 798,412
_0703
Shew_0704: Shew_0704 - hypothetical protein (RefSeq), at 798,599 to 799,195
_0704
Shew_0705: Shew_0705 - hypothetical protein (RefSeq), at 799,500 to 800,441
_0705
Position (kb) 798
799
800 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 797.677 kb on - strand, within Shew_0702 at 797.849 kb on - strand at 797.955 kb on + strand at 797.963 kb on - strand at 797.963 kb on - strand at 798.134 kb on - strand, within Shew_0703 at 798.162 kb on + strand, within Shew_0703 at 798.251 kb on + strand, within Shew_0703 at 798.373 kb on + strand, within Shew_0703 at 798.435 kb on + strand at 798.503 kb on + strand at 798.526 kb on + strand at 798.677 kb on + strand, within Shew_0704 at 798.701 kb on - strand, within Shew_0704 at 798.861 kb on - strand, within Shew_0704 at 799.040 kb on - strand, within Shew_0704 at 799.040 kb on - strand, within Shew_0704 at 799.433 kb on + strand at 799.433 kb on + strand at 799.530 kb on - strand at 799.546 kb on + strand at 799.855 kb on - strand, within Shew_0705 at 799.936 kb on + strand, within Shew_0705 at 799.936 kb on + strand, within Shew_0705 at 799.936 kb on + strand, within Shew_0705 at 799.936 kb on + strand, within Shew_0705 at 799.944 kb on - strand, within Shew_0705 at 800.062 kb on + strand, within Shew_0705
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 797,677 - Shew_0702 0.82 -1.1 797,849 - -0.2 797,955 + +3.3 797,963 - -2.8 797,963 - -0.1 798,134 - Shew_0703 0.23 +2.5 798,162 + Shew_0703 0.31 +0.9 798,251 + Shew_0703 0.55 -0.6 798,373 + Shew_0703 0.89 -0.9 798,435 + -0.4 798,503 + -0.2 798,526 + -0.1 798,677 + Shew_0704 0.13 +0.2 798,701 - Shew_0704 0.17 +3.9 798,861 - Shew_0704 0.44 +1.0 799,040 - Shew_0704 0.74 +0.4 799,040 - Shew_0704 0.74 +0.1 799,433 + -0.7 799,433 + +1.0 799,530 - +0.2 799,546 + +0.8 799,855 - Shew_0705 0.38 -0.3 799,936 + Shew_0705 0.46 -0.5 799,936 + Shew_0705 0.46 +0.3 799,936 + Shew_0705 0.46 +0.1 799,936 + Shew_0705 0.46 +0.9 799,944 - Shew_0705 0.47 -1.3 800,062 + Shew_0705 0.60 -0.7
Or see this region's nucleotide sequence