Strain Fitness in Shewanella loihica PV-4 around Shew_0619

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0617 and Shew_0618 are separated by 24 nucleotidesShew_0618 and Shew_0619 are separated by 253 nucleotidesShew_0619 and Shew_0620 are separated by 58 nucleotidesShew_0620 and Shew_0621 are separated by 80 nucleotides Shew_0617: Shew_0617 - phosphate transporter (RefSeq), at 701,995 to 703,263 _0617 Shew_0618: Shew_0618 - hypothetical protein (RefSeq), at 703,288 to 703,968 _0618 Shew_0619: Shew_0619 - adenylate cyclase (RefSeq), at 704,222 to 705,709 _0619 Shew_0620: Shew_0620 - ion transport 2 domain-containing protein (RefSeq), at 705,768 to 706,562 _0620 Shew_0621: Shew_0621 - hypothetical protein (RefSeq), at 706,643 to 706,975 _0621 Position (kb) 704 705 706Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 703.311 kb on - strandat 703.420 kb on - strand, within Shew_0618at 703.524 kb on - strand, within Shew_0618at 703.888 kb on + strand, within Shew_0618at 704.030 kb on - strandat 704.030 kb on - strandat 704.273 kb on + strandat 704.295 kb on - strandat 704.303 kb on - strandat 704.373 kb on - strand, within Shew_0619at 704.680 kb on + strand, within Shew_0619at 704.883 kb on + strand, within Shew_0619at 705.084 kb on + strand, within Shew_0619at 705.136 kb on + strand, within Shew_0619at 705.240 kb on + strand, within Shew_0619at 705.300 kb on - strand, within Shew_0619at 705.327 kb on - strand, within Shew_0619at 705.328 kb on - strand, within Shew_0619at 705.520 kb on + strand, within Shew_0619at 706.222 kb on - strand, within Shew_0620

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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703,311 - +2.7
703,420 - Shew_0618 0.19 +6.6
703,524 - Shew_0618 0.35 +6.1
703,888 + Shew_0618 0.88 +2.0
704,030 - +5.7
704,030 - +4.9
704,273 + +0.9
704,295 - -0.3
704,303 - +0.9
704,373 - Shew_0619 0.10 -0.2
704,680 + Shew_0619 0.31 -0.8
704,883 + Shew_0619 0.44 -0.6
705,084 + Shew_0619 0.58 -0.0
705,136 + Shew_0619 0.61 +0.0
705,240 + Shew_0619 0.68 -0.9
705,300 - Shew_0619 0.72 -1.1
705,327 - Shew_0619 0.74 +0.1
705,328 - Shew_0619 0.74 +1.6
705,520 + Shew_0619 0.87 -0.3
706,222 - Shew_0620 0.57 +0.5

Or see this region's nucleotide sequence