Strain Fitness in Shewanella loihica PV-4 around Shew_0547

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0545 and Shew_0546 overlap by 4 nucleotidesShew_0546 and Shew_0547 are separated by 9 nucleotidesShew_0547 and Shew_0548 are separated by 194 nucleotidesShew_0548 and Shew_0549 are separated by 48 nucleotides Shew_0545: Shew_0545 - ADP-ribose diphosphatase (RefSeq), at 616,103 to 616,711 _0545 Shew_0546: Shew_0546 - hypothetical protein (RefSeq), at 616,708 to 617,154 _0546 Shew_0547: Shew_0547 - calcineurin phosphoesterase C-terminal domain-containing protein (RefSeq), at 617,164 to 618,003 _0547 Shew_0548: Shew_0548 - yqiA-like hydrolase, affects the cell envelope (from data), at 618,198 to 618,776 _0548 Shew_0549: Shew_0549 - DNA topoisomerase IV subunit B (RefSeq), at 618,825 to 620,711 _0549 Position (kb) 617 618 619Strain fitness (log2 ratio) -2 -1 0 1at 616.296 kb on + strand, within Shew_0545at 616.304 kb on - strand, within Shew_0545at 616.347 kb on + strand, within Shew_0545at 616.414 kb on - strand, within Shew_0545at 616.439 kb on - strand, within Shew_0545at 616.700 kb on - strandat 616.781 kb on - strand, within Shew_0546at 616.795 kb on + strand, within Shew_0546at 617.142 kb on + strandat 617.689 kb on + strand, within Shew_0547at 618.437 kb on + strand, within Shew_0548at 618.445 kb on - strand, within Shew_0548at 618.562 kb on + strand, within Shew_0548

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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616,296 + Shew_0545 0.32 -1.8
616,304 - Shew_0545 0.33 -0.6
616,347 + Shew_0545 0.40 -2.3
616,414 - Shew_0545 0.51 -0.3
616,439 - Shew_0545 0.55 -1.4
616,700 - -0.7
616,781 - Shew_0546 0.16 -0.2
616,795 + Shew_0546 0.19 -1.5
617,142 + -2.1
617,689 + Shew_0547 0.62 -1.6
618,437 + Shew_0548 0.41 -2.4
618,445 - Shew_0548 0.43 -2.7
618,562 + Shew_0548 0.63 -2.3

Or see this region's nucleotide sequence